Analysis of interatomic Contacts of Structural Units in PDB entry:
6SMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SMS entry

There are 2 chains in PDB entry 6SMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 16GLU 91
A
 ALA 93LYS 739
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6SMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 59Right-handed alpha
Helix 2
AA2
A
60 63Right-handed 310
Helix 3
AA3
A
136 142Right-handed alpha
Helix 4
AA4
A
157 159Right-handed 310
Helix 5
AA5
A
168 179Right-handed alpha
Helix 6
AA6
A
204 211Right-handed alpha
Helix 7
AA7
A
224 229Right-handed alpha
Helix 8
AA8
A
249 256Right-handed alpha
Helix 9
AA9
A
263 267Right-handed 310
Helix 10
AB1
A
305 310Right-handed alpha
Helix 11
AB2
A
350 354Right-handed 310
Helix 12
AB3
A
393 397Right-handed 310
Helix 13
AB4
A
420 426Right-handed 310
Helix 14
AB5
A
434 442Right-handed alpha
Helix 15
AB6
A
472 482Right-handed alpha
Helix 16
AB7
A
515 524Right-handed alpha
Helix 17
AB8
A
553 565Right-handed alpha
Helix 18
AB9
A
575 579Right-handed 310
Helix 19
AC1
A
597 601Right-handed 310
Helix 20
AC2
A
680 684Right-handed 310
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There are 15 sheets in PDB entry 6SMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 42first strand
Strand 2
A
25 29anti-parallel
Strand 3
A
65 75anti-parallel
Strand 4
A
120 133anti-parallel
Strand 5
A
93 97anti-parallel
Strand 6
A
100 104anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 42first strand
Strand 2
A
25 29anti-parallel
Strand 3
A
65 75anti-parallel
Strand 4
A
161 162anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
A
81 87anti-parallel
Strand 3
A
144 147anti-parallel
Strand 4
A
153 155anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 215first strand
Strand 2
A
218 221anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 287first strand
Strand 2
A
356 367anti-parallel
Strand 3
A
417 418anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 409first strand
Strand 2
A
356 367anti-parallel
Strand 3
A
430 433anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 298first strand
Strand 2
A
344 345anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
336 340anti-parallel
Strand 3
A
446 451anti-parallel
Strand 4
A
379 384anti-parallel
Strand 5
A
387 392anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 318first strand
Strand 2
A
323 328anti-parallel
Strand 3
A
548 552parallel
Strand 4
A
586 590anti-parallel
Strand 5
A
483 489parallel
Strand 6
A
494 500anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 376first strand
Strand 2
A
401 403anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 460first strand
Strand 2
A
466 471anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 531first strand
Strand 2
A
534 537anti-parallel
Strand 3
A
540 541anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 596first strand
Strand 2
A
724 736anti-parallel
Strand 3
A
630 635anti-parallel
Strand 4
A
622 627anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 596first strand
Strand 2
A
724 736anti-parallel
Strand 3
A
660 670anti-parallel
Strand 4
A
696 704anti-parallel
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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
602 604first strand
Strand 2
A
611 614anti-parallel
Strand 3
A
617 620anti-parallel
Strand 4
A
645 648anti-parallel
Strand 5
A
712 717anti-parallel
Strand 6
A
674 679anti-parallel
Strand 7
A
685 689anti-parallel
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