Analysis of interatomic Contacts of Structural Units in PDB entry:
6SMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SMV entry

There is 1 chain in PDB entry 6SMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 2015
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 6SMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 33Right-handed alpha
Helix 2
AA2
A
43 53Right-handed alpha
Helix 3
AA3
A
67 74Right-handed alpha
Helix 4
AA4
A
83 88Right-handed alpha
Helix 5
AA5
A
91 97Right-handed alpha
Helix 6
AA6
A
129 131Right-handed 310
Helix 7
AA7
A
132 143Right-handed alpha
Helix 8
AA8
A
154 163Right-handed alpha
Helix 9
AA9
A
164 166Right-handed 310
Helix 10
AB1
A
186 202Right-handed alpha
Helix 11
AB2
A
210 219Right-handed alpha
Helix 12
AB3
A
229 231Right-handed 310
Helix 13
AB4
A
232 239Right-handed alpha
Helix 14
AB5
A
273 283Right-handed alpha
Helix 15
AB6
A
287 298Right-handed alpha
Helix 16
AB7
A
305 310Right-handed alpha
Helix 17
AB8
A
315 328Right-handed alpha
Helix 18
AB9
A
336 353Right-handed alpha
Helix 19
AC1
A
357 1002Right-handed alpha
Helix 20
AC2
A
1006 1014Right-handed alpha
Helix 21
AC3
A
1017 1021Right-handed 310
Helix 22
AC4
A
1033 1043Right-handed alpha
Helix 23
AC5
A
1058 1073Right-handed alpha
Helix 24
AC6
A
1082 1088Right-handed alpha
Helix 25
AC7
A
1106 1116Right-handed alpha
Helix 26
AC8
A
1999 2013Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6SMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
8 11parallel
Strand 3
A
60 64parallel
Strand 4
A
259 267anti-parallel
Strand 5
A
107 112anti-parallel
Strand 6
A
302 303anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
8 11parallel
Strand 3
A
60 64parallel
Strand 4
A
259 267anti-parallel
Strand 5
A
329 330parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
223 228parallel
Strand 3
A
115 119anti-parallel
Strand 4
A
243 246anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
182 183anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
254 255anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1048 1050first strand
Strand 2
A
1053 1055anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1074 1079first strand
Strand 2
A
1119 1123anti-parallel
Strand 3
A
1126 1129anti-parallel
Strand 4
A
1096 1098parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il