Analysis of interatomic Contacts of Structural Units in PDB entry:
6SMW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SMW entry

There are 3 chains in PDB entry 6SMW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 43	GLU 517
B	SER 43	GLU 517
C	SER 43	THR 349

There are102 helices in PDB entry 6SMW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	53	Right-handed alpha
Helix 2	AA2	A	54	59	Right-handed alpha
Helix 3	AA3	A	59	76	Right-handed alpha
Helix 4	AA4	A	87	95	Right-handed alpha
Helix 5	AA5	A	96	101	Right-handed 310
Helix 6	AA6	A	115	133	Right-handed alpha
Helix 7	AA7	A	148	161	Right-handed alpha
Helix 8	AA8	A	172	175	Right-handed 310
Helix 9	AA9	A	177	181	Right-handed 310
Helix 10	AB1	A	191	196	Right-handed alpha
Helix 11	AB2	A	211	223	Right-handed alpha
Helix 12	AB3	A	239	251	Right-handed alpha
Helix 13	AB4	A	261	267	Right-handed alpha
Helix 14	AB5	A	272	276	Right-handed 310
Helix 15	AB6	A	316	325	Right-handed alpha
Helix 16	AB7	A	333	347	Right-handed alpha
Helix 17	AB8	A	349	373	Right-handed alpha
Helix 18	AB9	A	379	381	Right-handed 310
Helix 19	AC1	A	392	395	Right-handed 310
Helix 20	AC2	A	397	408	Right-handed alpha
Helix 21	AC3	A	433	439	Right-handed alpha
Helix 22	AC4	A	442	467	Right-handed alpha
Helix 23	AC5	A	471	482	Right-handed alpha
Helix 24	AC6	A	482	502	Right-handed alpha
Helix 25	AC7	A	509	513	Right-handed 310
Helix 26	AC8	B	44	53	Right-handed alpha
Helix 27	AC9	B	54	59	Right-handed alpha
Helix 28	AD1	B	59	76	Right-handed alpha
Helix 29	AD2	B	87	95	Right-handed alpha
Helix 30	AD3	B	96	101	Right-handed 310
Helix 31	AD4	B	115	133	Right-handed alpha
Helix 32	AD5	B	148	161	Right-handed alpha
Helix 33	AD6	B	172	175	Right-handed 310
Helix 34	AD7	B	177	181	Right-handed 310
Helix 35	AD8	B	191	196	Right-handed alpha
Helix 36	AD9	B	211	223	Right-handed alpha
Helix 37	AE1	B	239	251	Right-handed alpha
Helix 38	AE2	B	261	267	Right-handed alpha
Helix 39	AE3	B	272	276	Right-handed 310
Helix 40	AE4	B	304	308	Right-handed 310
Helix 41	AE5	B	316	325	Right-handed alpha
Helix 42	AE6	B	333	347	Right-handed alpha
Helix 43	AE7	B	349	373	Right-handed alpha
Helix 44	AE8	B	379	381	Right-handed 310
Helix 45	AE9	B	392	395	Right-handed 310
Helix 46	AF1	B	397	408	Right-handed alpha
Helix 47	AF2	B	433	439	Right-handed alpha
Helix 48	AF3	B	442	467	Right-handed alpha
Helix 49	AF4	B	471	482	Right-handed alpha
Helix 50	AF5	B	482	502	Right-handed alpha
Helix 51	AF6	B	509	513	Right-handed 310
Helix 52	AF7	C	44	53	Right-handed alpha
Helix 53	AF8	C	54	59	Right-handed alpha
Helix 54	AF9	C	59	76	Right-handed alpha
Helix 55	AG1	C	87	95	Right-handed alpha
Helix 56	AG2	C	96	101	Right-handed 310
Helix 57	AG3	C	115	133	Right-handed alpha
Helix 58	AG4	C	148	161	Right-handed alpha
Helix 59	AG5	C	172	175	Right-handed 310
Helix 60	AG6	C	177	181	Right-handed 310
Helix 61	AG7	C	191	196	Right-handed alpha
Helix 62	AG8	C	211	223	Right-handed alpha
Helix 63	AG9	C	239	251	Right-handed alpha
Helix 64	AH1	C	261	267	Right-handed alpha
Helix 65	AH2	C	272	276	Right-handed 310
Helix 66	AH3	C	316	325	Right-handed alpha
Helix 67	AH4	C	333	347	Right-handed alpha
Helix 68	AH5	C	349	373	Right-handed alpha
Helix 69	AH6	C	379	381	Right-handed 310
Helix 70	AH7	C	392	395	Right-handed 310
Helix 71	AH8	C	397	408	Right-handed alpha
Helix 72	AH9	C	433	439	Right-handed alpha
Helix 73	AI1	C	442	467	Right-handed alpha
Helix 74	AI2	C	471	482	Right-handed alpha
Helix 75	AI3	C	482	502	Right-handed alpha
Helix 76	AI4	C	509	513	Right-handed 310
Helix 77	AI5	D	39	53	Right-handed alpha
Helix 78	AI6	D	54	59	Right-handed alpha
Helix 79	AI7	D	59	76	Right-handed alpha
Helix 80	AI8	D	87	95	Right-handed alpha
Helix 81	AI9	D	96	101	Right-handed 310
Helix 82	AJ1	D	115	133	Right-handed alpha
Helix 83	AJ2	D	148	161	Right-handed alpha
Helix 84	AJ3	D	172	175	Right-handed 310
Helix 85	AJ4	D	177	181	Right-handed 310
Helix 86	AJ5	D	191	196	Right-handed alpha
Helix 87	AJ6	D	211	223	Right-handed alpha
Helix 88	AJ7	D	239	251	Right-handed alpha
Helix 89	AJ8	D	261	267	Right-handed alpha
Helix 90	AJ9	D	272	276	Right-handed 310
Helix 91	AK1	D	285	289	Right-handed 310
Helix 92	AK2	D	316	325	Right-handed alpha
Helix 93	AK3	D	333	348	Right-handed alpha
Helix 94	AK4	D	349	373	Right-handed alpha
Helix 95	AK5	D	379	381	Right-handed 310
Helix 96	AK6	D	392	395	Right-handed 310
Helix 97	AK7	D	397	408	Right-handed alpha
Helix 98	AK8	D	433	439	Right-handed alpha
Helix 99	AK9	D	442	467	Right-handed alpha
Helix 100	AL1	D	471	482	Right-handed alpha
Helix 101	AL2	D	482	502	Right-handed alpha
Helix 102	AL3	D	509	513	Right-handed 310

There are 19 sheets in PDB entry 6SMW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	410	411	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	109	110	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	143	first strand
Strand 2	A	294	299	anti-parallel
Strand 3	A	279	283	anti-parallel
Strand 4	A	253	257	parallel
Strand 5	A	226	229	parallel
Strand 6	A	166	170	parallel
Strand 7	A	197	201	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	305	first strand
Strand 2	A	311	313	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	377	first strand
Strand 2	A	386	390	anti-parallel
Strand 3	A	428	432	anti-parallel
Strand 4	A	413	415	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	410	411	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	109	110	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	143	first strand
Strand 2	B	294	299	anti-parallel
Strand 3	B	279	283	anti-parallel
Strand 4	B	253	257	parallel
Strand 5	B	226	229	parallel
Strand 6	B	166	170	parallel
Strand 7	B	197	201	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	377	first strand
Strand 2	B	386	390	anti-parallel
Strand 3	B	428	432	anti-parallel
Strand 4	B	413	415	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	410	411	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	106	first strand
Strand 2	C	109	110	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	143	first strand
Strand 2	C	294	299	anti-parallel
Strand 3	C	279	283	anti-parallel
Strand 4	C	253	257	parallel
Strand 5	C	226	229	parallel
Strand 6	C	166	170	parallel
Strand 7	C	197	201	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	305	first strand
Strand 2	C	311	313	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	377	first strand
Strand 2	C	386	390	anti-parallel
Strand 3	C	428	432	anti-parallel
Strand 4	C	413	415	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	410	411	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	106	first strand
Strand 2	D	109	110	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	143	first strand
Strand 2	D	294	299	anti-parallel
Strand 3	D	279	283	anti-parallel
Strand 4	D	253	257	parallel
Strand 5	D	226	229	parallel
Strand 6	D	166	170	parallel
Strand 7	D	197	201	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	302	305	first strand
Strand 2	D	311	313	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	377	first strand
Strand 2	D	386	390	anti-parallel
Strand 3	D	428	432	anti-parallel
Strand 4	D	413	415	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SMW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SMW