Analysis of interatomic Contacts of Structural Units in PDB entry:
6SN8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SN8 entry

There are 5 chains in PDB entry 6SN8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 24	ILE 806
B	LEU 22	ARG 392
C	CYS 25	ARG 83
D	GLU 26	SER 243
E	GLU 24	LEU 110

There are 28 helices in PDB entry 6SN8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	44	Right-handed alpha
Helix 2	AA2	A	55	68	Right-handed alpha
Helix 3	AA3	A	106	117	Right-handed alpha
Helix 4	AA4	A	126	128	Right-handed 310
Helix 5	AA5	A	129	145	Right-handed alpha
Helix 6	AA6	A	189	196	Right-handed alpha
Helix 7	AA7	A	215	232	Right-handed alpha
Helix 8	AA8	A	280	288	Right-handed alpha
Helix 9	AA9	A	297	315	Right-handed alpha
Helix 10	AB1	A	361	367	Right-handed alpha
Helix 11	AB2	A	378	391	Right-handed alpha
Helix 12	AB3	A	448	452	Right-handed 310
Helix 13	AB4	A	542	552	Right-handed alpha
Helix 14	AB5	C	39	44	Right-handed alpha
Helix 15	AB6	C	76	80	Right-handed 310
Helix 16	AB7	D	31	45	Right-handed alpha
Helix 17	AB8	D	47	62	Right-handed alpha
Helix 18	AB9	D	67	82	Right-handed alpha
Helix 19	AC1	D	84	99	Right-handed alpha
Helix 20	AC2	D	104	121	Right-handed alpha
Helix 21	AC3	D	124	129	Right-handed 310
Helix 22	AC4	D	137	154	Right-handed alpha
Helix 23	AC5	D	158	189	Right-handed alpha
Helix 24	AC6	D	190	203	Right-handed alpha
Helix 25	AC7	D	208	225	Right-handed alpha
Helix 26	AC8	D	227	243	Right-handed alpha
Helix 27	AC9	E	39	45	Right-handed alpha
Helix 28	AD1	E	51	59	Right-handed alpha

There are 20 sheets in PDB entry 6SN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	A	83	87	parallel
Strand 3	A	76	80	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	100	first strand
Strand 2	A	163	174	parallel
Strand 3	A	146	157	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	183	first strand
Strand 2	A	253	261	parallel
Strand 3	A	239	247	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	A	267	276	anti-parallel
Strand 3	A	334	342	parallel
Strand 4	A	321	329	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	355	first strand
Strand 2	A	412	417	parallel
Strand 3	A	401	404	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	397	first strand
Strand 2	A	419	420	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	444	445	anti-parallel
Strand 3	A	457	458	anti-parallel

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There are 13 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	441	first strand
Strand 2	A	460	462	anti-parallel
Strand 3	A	467	475	anti-parallel
Strand 4	A	485	494	anti-parallel
Strand 5	A	505	514	anti-parallel
Strand 6	A	523	537	anti-parallel
Strand 7	A	564	578	anti-parallel
Strand 8	A	594	600	anti-parallel
Strand 9	A	608	614	anti-parallel
Strand 10	A	628	640	anti-parallel
Strand 11	A	617	620	anti-parallel
Strand 12	A	590	591	anti-parallel
Strand 13	A	580	581	anti-parallel

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There are 11 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	518	first strand
Strand 2	A	523	537	anti-parallel
Strand 3	A	564	578	anti-parallel
Strand 4	A	594	600	anti-parallel
Strand 5	A	608	614	anti-parallel
Strand 6	A	628	640	anti-parallel
Strand 7	A	710	719	anti-parallel
Strand 8	A	734	745	anti-parallel
Strand 9	A	766	778	anti-parallel
Strand 10	A	781	789	anti-parallel
Strand 11	A	802	804	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	674	first strand
Strand 2	A	700	705	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	388	389	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	73	anti-parallel
Strand 3	B	83	85	anti-parallel
Strand 4	B	91	93	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	122	124	anti-parallel
Strand 3	B	130	134	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	171	175	anti-parallel
Strand 4	B	181	183	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	209	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	226	231	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	254	first strand
Strand 2	B	257	261	anti-parallel
Strand 3	B	267	271	anti-parallel
Strand 4	B	277	281	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	292	first strand
Strand 2	B	295	299	anti-parallel
Strand 3	B	305	308	anti-parallel
Strand 4	B	315	319	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	333	first strand
Strand 2	B	336	341	anti-parallel
Strand 3	B	346	349	anti-parallel
Strand 4	B	356	358	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	77	80	anti-parallel
Strand 3	E	87	94	anti-parallel
Strand 4	E	72	74	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	77	80	anti-parallel
Strand 3	E	87	94	anti-parallel
Strand 4	E	105	108	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SN8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SN8