Analysis of interatomic Contacts of Structural Units in PDB entry:
6SNL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SNL entry

There are 6 chains in PDB entry 6SNL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	TYR 320
B	THR 3	TYR 320
C	MET 4	GLY 321
D	ALA 2	GLY 321
E	ALA 2	TYR 320
F	THR 3	TYR 320

There are 68 helices in PDB entry 6SNL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	20	Right-handed alpha
Helix 2	AA2	A	23	27	Right-handed 310
Helix 3	AA3	A	48	53	Right-handed alpha
Helix 4	AA4	A	70	85	Right-handed alpha
Helix 5	AA5	A	92	108	Right-handed alpha
Helix 6	AA6	A	150	157	Right-handed alpha
Helix 7	AA7	A	183	196	Right-handed alpha
Helix 8	AA8	A	236	250	Right-handed alpha
Helix 9	AA9	A	260	266	Right-handed alpha
Helix 10	AB1	A	295	308	Right-handed alpha
Helix 11	AB2	A	309	311	Right-handed 310
Helix 12	AB3	B	4	20	Right-handed alpha
Helix 13	AB4	B	23	27	Right-handed 310
Helix 14	AB5	B	40	42	Right-handed 310
Helix 15	AB6	B	48	53	Right-handed alpha
Helix 16	AB7	B	70	85	Right-handed alpha
Helix 17	AB8	B	92	108	Right-handed alpha
Helix 18	AB9	B	150	157	Right-handed alpha
Helix 19	AC1	B	183	196	Right-handed alpha
Helix 20	AC2	B	236	250	Right-handed alpha
Helix 21	AC3	B	260	266	Right-handed alpha
Helix 22	AC4	B	295	308	Right-handed alpha
Helix 23	AC5	B	309	311	Right-handed 310
Helix 24	AC6	C	5	20	Right-handed alpha
Helix 25	AC7	C	23	27	Right-handed 310
Helix 26	AC8	C	48	53	Right-handed alpha
Helix 27	AC9	C	70	85	Right-handed alpha
Helix 28	AD1	C	92	108	Right-handed alpha
Helix 29	AD2	C	150	157	Right-handed alpha
Helix 30	AD3	C	183	196	Right-handed alpha
Helix 31	AD4	C	236	250	Right-handed alpha
Helix 32	AD5	C	260	266	Right-handed alpha
Helix 33	AD6	C	295	308	Right-handed alpha
Helix 34	AD7	C	309	311	Right-handed 310
Helix 35	AD8	D	3	20	Right-handed alpha
Helix 36	AD9	D	23	27	Right-handed 310
Helix 37	AE1	D	48	53	Right-handed alpha
Helix 38	AE2	D	70	85	Right-handed alpha
Helix 39	AE3	D	92	108	Right-handed alpha
Helix 40	AE4	D	150	157	Right-handed alpha
Helix 41	AE5	D	183	196	Right-handed alpha
Helix 42	AE6	D	236	249	Right-handed alpha
Helix 43	AE7	D	260	266	Right-handed alpha
Helix 44	AE8	D	295	308	Right-handed alpha
Helix 45	AE9	D	309	311	Right-handed 310
Helix 46	AF1	E	3	20	Right-handed alpha
Helix 47	AF2	E	23	27	Right-handed 310
Helix 48	AF3	E	40	42	Right-handed 310
Helix 49	AF4	E	48	53	Right-handed alpha
Helix 50	AF5	E	70	85	Right-handed alpha
Helix 51	AF6	E	92	108	Right-handed alpha
Helix 52	AF7	E	150	157	Right-handed alpha
Helix 53	AF8	E	183	196	Right-handed alpha
Helix 54	AF9	E	236	250	Right-handed alpha
Helix 55	AG1	E	260	266	Right-handed alpha
Helix 56	AG2	E	295	308	Right-handed alpha
Helix 57	AG3	E	309	311	Right-handed 310
Helix 58	AG4	F	4	20	Right-handed alpha
Helix 59	AG5	F	23	27	Right-handed 310
Helix 60	AG6	F	48	53	Right-handed alpha
Helix 61	AG7	F	70	85	Right-handed alpha
Helix 62	AG8	F	92	108	Right-handed alpha
Helix 63	AG9	F	150	155	Right-handed alpha
Helix 64	AH1	F	183	196	Right-handed alpha
Helix 65	AH2	F	236	250	Right-handed alpha
Helix 66	AH3	F	260	266	Right-handed alpha
Helix 67	AH4	F	295	308	Right-handed alpha
Helix 68	AH5	F	309	311	Right-handed 310

There are 20 sheets in PDB entry 6SNL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	29	32	anti-parallel
Strand 3	A	137	144	anti-parallel
Strand 4	A	112	119	anti-parallel
Strand 5	A	56	59	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	29	32	anti-parallel
Strand 3	A	137	144	anti-parallel
Strand 4	A	112	119	anti-parallel
Strand 5	A	62	64	anti-parallel
Strand 6	A	67	69	anti-parallel
Strand 7	A	315	317	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	D	43	45	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	256	first strand
Strand 2	A	225	229	parallel
Strand 3	A	217	222	anti-parallel
Strand 4	A	268	273	anti-parallel
Strand 5	A	277	284	anti-parallel
Strand 6	A	158	167	parallel
Strand 7	A	200	204	parallel
Strand 8	A	210	213	anti-parallel
Strand 9	A	217	222	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	29	32	anti-parallel
Strand 3	B	137	144	anti-parallel
Strand 4	B	112	119	anti-parallel
Strand 5	B	56	59	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	29	32	anti-parallel
Strand 3	B	137	144	anti-parallel
Strand 4	B	112	119	anti-parallel
Strand 5	B	62	64	anti-parallel
Strand 6	B	67	69	anti-parallel
Strand 7	B	315	317	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	204	first strand
Strand 2	B	158	167	parallel
Strand 3	B	277	284	parallel
Strand 4	B	268	273	anti-parallel
Strand 5	B	217	222	anti-parallel
Strand 6	B	225	229	anti-parallel
Strand 7	B	252	256	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	29	32	anti-parallel
Strand 3	C	137	144	anti-parallel
Strand 4	C	112	119	anti-parallel
Strand 5	C	56	59	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	29	32	anti-parallel
Strand 3	C	137	144	anti-parallel
Strand 4	C	112	119	anti-parallel
Strand 5	C	62	63	anti-parallel
Strand 6	C	67	69	anti-parallel
Strand 7	C	315	317	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	F	43	45	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	202	first strand
Strand 2	C	158	162	parallel
Strand 3	C	277	284	parallel
Strand 4	C	268	273	anti-parallel
Strand 5	C	217	222	anti-parallel
Strand 6	C	225	229	anti-parallel
Strand 7	C	252	256	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	29	32	anti-parallel
Strand 3	D	137	144	anti-parallel
Strand 4	D	112	119	anti-parallel
Strand 5	D	56	59	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	29	32	anti-parallel
Strand 3	D	137	144	anti-parallel
Strand 4	D	112	119	anti-parallel
Strand 5	D	62	64	anti-parallel
Strand 6	D	67	69	anti-parallel
Strand 7	D	315	317	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	204	first strand
Strand 2	D	158	167	parallel
Strand 3	D	277	284	parallel
Strand 4	D	268	273	anti-parallel
Strand 5	D	217	222	anti-parallel
Strand 6	D	225	229	anti-parallel
Strand 7	D	253	256	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand
Strand 2	E	29	32	anti-parallel
Strand 3	E	137	144	anti-parallel
Strand 4	E	112	119	anti-parallel
Strand 5	E	56	59	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand
Strand 2	E	29	32	anti-parallel
Strand 3	E	137	144	anti-parallel
Strand 4	E	112	119	anti-parallel
Strand 5	E	62	64	anti-parallel
Strand 6	E	67	69	anti-parallel
Strand 7	E	315	317	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	204	first strand
Strand 2	E	158	167	parallel
Strand 3	E	277	284	parallel
Strand 4	E	268	273	anti-parallel
Strand 5	E	217	222	anti-parallel
Strand 6	E	225	229	anti-parallel
Strand 7	E	252	256	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	38	first strand
Strand 2	F	29	32	anti-parallel
Strand 3	F	137	144	anti-parallel
Strand 4	F	112	119	anti-parallel
Strand 5	F	56	59	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	38	first strand
Strand 2	F	29	32	anti-parallel
Strand 3	F	137	144	anti-parallel
Strand 4	F	112	119	anti-parallel
Strand 5	F	62	63	anti-parallel
Strand 6	F	67	69	anti-parallel
Strand 7	F	315	317	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	200	204	first strand
Strand 2	F	158	167	parallel
Strand 3	F	277	284	parallel
Strand 4	F	268	273	anti-parallel
Strand 5	F	217	222	anti-parallel
Strand 6	F	225	229	anti-parallel
Strand 7	F	253	256	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SNL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SNL