Analysis of interatomic Contacts of Structural Units in PDB entry:
6SNP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SNP entry

There is 1 chain in PDB entry 6SNP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5THR 580
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 6SNP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 18Right-handed alpha
Helix 2
AA2
A
44 49Right-handed alpha
Helix 3
AA3
A
52 64Right-handed alpha
Helix 4
AA4
A
66 70Right-handed 310
Helix 5
AA5
A
84 99Right-handed alpha
Helix 6
AA6
A
113 125Right-handed alpha
Helix 7
AA7
A
158 171Right-handed alpha
Helix 8
AA8
A
210 221Right-handed alpha
Helix 9
AA9
A
222 231Right-handed alpha
Helix 10
AB1
A
246 254Right-handed alpha
Helix 11
AB2
A
262 264Right-handed 310
Helix 12
AB3
A
274 278Right-handed 310
Helix 13
AB4
A
287 295Right-handed alpha
Helix 14
AB5
A
323 334Right-handed alpha
Helix 15
AB6
A
335 337Right-handed 310
Helix 16
AB7
A
338 345Right-handed alpha
Helix 17
AB8
A
357 366Right-handed alpha
Helix 18
AB9
A
376 386Right-handed alpha
Helix 19
AC1
A
408 424Right-handed alpha
Helix 20
AC2
A
426 439Right-handed alpha
Helix 21
AC3
A
452 469Right-handed alpha
Helix 22
AC4
A
542 546Right-handed 310
Helix 23
AC5
A
549 566Right-handed alpha
Helix 24
AC6
A
566 572Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6SNP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
174 177anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
144 151anti-parallel
Strand 3
A
128 132anti-parallel
Strand 4
A
74 79parallel
Strand 5
A
103 111parallel
Strand 6
A
202 207parallel
Strand 7
A
189 193anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
238 241parallel
Strand 3
A
301 305parallel
Strand 4
A
312 316anti-parallel
Strand 5
A
320 322anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 373first strand
Strand 2
A
349 352parallel
Strand 3
A
391 394parallel
Strand 4
A
398 401anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 477first strand
Strand 2
A
484 491anti-parallel
Strand 3
A
508 512anti-parallel
Strand 4
A
517 522anti-parallel
Strand 5
A
530 540anti-parallel
Strand 6
A
440 451anti-parallel
Strand 7
A
578 580anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 495first strand
Strand 2
A
502 503anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il