Analysis of interatomic Contacts of Structural Units in PDB entry:
6SNS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SNS entry

There are 2 chains in PDB entry 6SNS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 505CYS 769
B
 SER 486ALA 712
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6SNS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
511 525Right-handed alpha
Helix 2
AA2
A
526 535Right-handed alpha
Helix 3
AA3
A
562 577Right-handed alpha
Helix 4
AA4
A
596 601Right-handed alpha
Helix 5
AA5
A
602 604Right-handed 310
Helix 6
AA6
A
609 622Right-handed alpha
Helix 7
AA7
A
623 631Right-handed alpha
Helix 8
AA8
A
665 676Right-handed alpha
Helix 9
AA9
A
681 698Right-handed alpha
Helix 10
AB1
A
713 734Right-handed alpha
Helix 11
AB2
A
734 743Right-handed alpha
Helix 12
AB3
A
746 751Right-handed 310
Helix 13
AB4
A
759 764Right-handed alpha
Helix 14
AB5
B
489 493Right-handed 310
Helix 15
AB6
B
524 546Right-handed alpha
Helix 16
AB7
B
562 572Right-handed alpha
Helix 17
AB8
B
572 578Right-handed alpha
Helix 18
AB9
B
601 609Right-handed alpha
Helix 19
AC1
B
611 628Right-handed alpha
Helix 20
AC2
B
649 657Right-handed 310
Helix 21
AC3
B
658 673Right-handed alpha
Helix 22
AC4
B
681 693Right-handed alpha
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There are 5 sheets in PDB entry 6SNS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 543first strand
Strand 2
A
548 553anti-parallel
Strand 3
A
556 561anti-parallel
Strand 4
A
753 758anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 585first strand
Strand 2
A
651 652anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
494 499first strand
Strand 2
B
503 507anti-parallel
Strand 3
B
519 523anti-parallel
Strand 4
B
708 710anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
552 553first strand
Strand 2
B
594 600anti-parallel
Strand 3
B
558 560anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
552 553first strand
Strand 2
B
594 600anti-parallel
Strand 3
B
582 586anti-parallel
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