Analysis of interatomic Contacts of Structural Units in PDB entry:
6SNU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SNU entry

There are 6 chains in PDB entry 6SNU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 5	ILE 262
A	GLY 264	ARG 456
B	ARG 5	ILE 262
B	GLY 264	GLY 457
C	ARG 5	ILE 262
C	GLY 264	VAL 373

There are 76 helices in PDB entry 6SNU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	17	Right-handed alpha
Helix 2	AA2	A	24	32	Right-handed alpha
Helix 3	AA3	A	56	61	Right-handed alpha
Helix 4	AA4	A	68	82	Right-handed alpha
Helix 5	AA5	A	93	107	Right-handed alpha
Helix 6	AA6	A	119	138	Right-handed alpha
Helix 7	AA7	A	157	164	Right-handed alpha
Helix 8	AA8	A	166	171	Right-handed alpha
Helix 9	AA9	A	187	192	Right-handed alpha
Helix 10	AB1	A	196	216	Right-handed alpha
Helix 11	AB2	A	240	252	Right-handed alpha
Helix 12	AB3	A	272	278	Right-handed alpha
Helix 13	AB4	A	287	291	Right-handed 310
Helix 14	AB5	A	304	313	Right-handed alpha
Helix 15	AB6	A	325	342	Right-handed alpha
Helix 16	AB7	A	343	351	Right-handed alpha
Helix 17	AB8	A	351	365	Right-handed alpha
Helix 18	AB9	A	398	411	Right-handed alpha
Helix 19	AC1	A	431	456	Right-handed alpha
Helix 20	AC2	B	6	17	Right-handed alpha
Helix 21	AC3	B	24	32	Right-handed alpha
Helix 22	AC4	B	56	61	Right-handed alpha
Helix 23	AC5	B	68	82	Right-handed alpha
Helix 24	AC6	B	93	107	Right-handed alpha
Helix 25	AC7	B	119	138	Right-handed alpha
Helix 26	AC8	B	157	164	Right-handed alpha
Helix 27	AC9	B	166	171	Right-handed alpha
Helix 28	AD1	B	187	192	Right-handed alpha
Helix 29	AD2	B	196	216	Right-handed alpha
Helix 30	AD3	B	240	252	Right-handed alpha
Helix 31	AD4	B	272	278	Right-handed alpha
Helix 32	AD5	B	287	291	Right-handed 310
Helix 33	AD6	B	304	313	Right-handed alpha
Helix 34	AD7	B	325	342	Right-handed alpha
Helix 35	AD8	B	343	351	Right-handed alpha
Helix 36	AD9	B	351	365	Right-handed alpha
Helix 37	AE1	B	398	411	Right-handed alpha
Helix 38	AE2	B	431	456	Right-handed alpha
Helix 39	AE3	C	6	17	Right-handed alpha
Helix 40	AE4	C	24	32	Right-handed alpha
Helix 41	AE5	C	56	61	Right-handed alpha
Helix 42	AE6	C	68	82	Right-handed alpha
Helix 43	AE7	C	93	107	Right-handed alpha
Helix 44	AE8	C	119	138	Right-handed alpha
Helix 45	AE9	C	157	164	Right-handed alpha
Helix 46	AF1	C	166	171	Right-handed alpha
Helix 47	AF2	C	187	192	Right-handed alpha
Helix 48	AF3	C	196	216	Right-handed alpha
Helix 49	AF4	C	240	252	Right-handed alpha
Helix 50	AF5	C	272	278	Right-handed alpha
Helix 51	AF6	C	287	291	Right-handed 310
Helix 52	AF7	C	304	313	Right-handed alpha
Helix 53	AF8	C	325	342	Right-handed alpha
Helix 54	AF9	C	343	351	Right-handed alpha
Helix 55	AG1	C	351	365	Right-handed alpha
Helix 56	AG2	C	398	411	Right-handed alpha
Helix 57	AG3	C	431	456	Right-handed alpha
Helix 58	AG4	D	6	17	Right-handed alpha
Helix 59	AG5	D	25	32	Right-handed alpha
Helix 60	AG6	D	56	61	Right-handed alpha
Helix 61	AG7	D	68	82	Right-handed alpha
Helix 62	AG8	D	93	107	Right-handed alpha
Helix 63	AG9	D	119	138	Right-handed alpha
Helix 64	AH1	D	157	164	Right-handed alpha
Helix 65	AH2	D	166	171	Right-handed alpha
Helix 66	AH3	D	187	192	Right-handed alpha
Helix 67	AH4	D	196	216	Right-handed alpha
Helix 68	AH5	D	240	252	Right-handed alpha
Helix 69	AH6	D	272	278	Right-handed alpha
Helix 70	AH7	D	287	291	Right-handed 310
Helix 71	AH8	D	304	313	Right-handed alpha
Helix 72	AH9	D	325	342	Right-handed alpha
Helix 73	AI1	D	343	351	Right-handed alpha
Helix 74	AI2	D	351	365	Right-handed alpha
Helix 75	AI3	D	398	411	Right-handed alpha
Helix 76	AI4	D	431	456	Right-handed alpha

There are 14 sheets in PDB entry 6SNU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	B	111	117	parallel
Strand 3	B	298	303	anti-parallel
Strand 4	B	283	286	anti-parallel
Strand 5	B	255	259	parallel
Strand 6	B	220	225	parallel
Strand 7	B	145	149	parallel
Strand 8	B	180	183	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	413	414	first strand
Strand 2	A	51	54	parallel
Strand 3	A	43	46	anti-parallel
Strand 4	A	34	40	anti-parallel
Strand 5	B	91	92	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	B	34	40	parallel
Strand 3	B	43	46	anti-parallel
Strand 4	B	51	54	anti-parallel
Strand 5	B	413	414	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	183	first strand
Strand 2	A	145	149	parallel
Strand 3	A	220	225	parallel
Strand 4	A	255	259	parallel
Strand 5	A	283	286	parallel
Strand 6	A	298	303	anti-parallel
Strand 7	A	111	117	anti-parallel
Strand 8	B	18	19	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	376	first strand
Strand 2	A	379	384	anti-parallel
Strand 3	A	421	424	anti-parallel
Strand 4	A	416	418	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	376	first strand
Strand 2	B	379	384	anti-parallel
Strand 3	B	421	424	anti-parallel
Strand 4	B	416	418	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	19	first strand
Strand 2	D	111	117	parallel
Strand 3	D	298	303	anti-parallel
Strand 4	D	283	286	anti-parallel
Strand 5	D	255	259	parallel
Strand 6	D	220	225	parallel
Strand 7	D	145	149	parallel
Strand 8	D	180	183	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	413	414	first strand
Strand 2	C	51	54	parallel
Strand 3	C	43	46	anti-parallel
Strand 4	C	34	40	anti-parallel
Strand 5	D	91	92	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	D	34	40	parallel
Strand 3	D	43	46	anti-parallel
Strand 4	D	51	54	anti-parallel
Strand 5	D	413	414	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	183	first strand
Strand 2	C	145	149	parallel
Strand 3	C	220	225	parallel
Strand 4	C	255	259	parallel
Strand 5	C	283	286	parallel
Strand 6	C	298	303	anti-parallel
Strand 7	C	111	117	anti-parallel
Strand 8	D	18	19	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	316	first strand
Strand 2	D	23	24	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	376	first strand
Strand 2	C	379	387	anti-parallel
Strand 3	C	392	393	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	376	first strand
Strand 2	C	379	387	anti-parallel
Strand 3	C	421	424	anti-parallel
Strand 4	C	416	418	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	376	first strand
Strand 2	D	379	384	anti-parallel
Strand 3	D	421	424	anti-parallel
Strand 4	D	416	418	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SNU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SNU