Analysis of interatomic Contacts of Structural Units in PDB entry:
6SNV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SNV entry

There are 4 chains in PDB entry 6SNV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 505	CYS 769
B	GLY 477	ALA 712
D	GLU 505	CYS 769
E	GLY 477	ALA 712

There are 43 helices in PDB entry 6SNV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	511	525	Right-handed alpha
Helix 2	AA2	A	526	535	Right-handed alpha
Helix 3	AA3	A	562	577	Right-handed alpha
Helix 4	AA4	A	596	601	Right-handed alpha
Helix 5	AA5	A	602	604	Right-handed 310
Helix 6	AA6	A	609	623	Right-handed alpha
Helix 7	AA7	A	623	631	Right-handed alpha
Helix 8	AA8	A	665	675	Right-handed alpha
Helix 9	AA9	A	681	698	Right-handed alpha
Helix 10	AB1	A	713	734	Right-handed alpha
Helix 11	AB2	A	734	743	Right-handed alpha
Helix 12	AB3	A	746	751	Right-handed 310
Helix 13	AB4	A	759	766	Right-handed alpha
Helix 14	AB5	B	481	492	Right-handed alpha
Helix 15	AB6	B	524	546	Right-handed alpha
Helix 16	AB7	B	562	578	Right-handed alpha
Helix 17	AB8	B	601	609	Right-handed alpha
Helix 18	AB9	B	611	628	Right-handed alpha
Helix 19	AC1	B	649	653	Right-handed 310
Helix 20	AC2	B	658	673	Right-handed alpha
Helix 21	AC3	B	681	693	Right-handed alpha
Helix 22	AC4	D	511	525	Right-handed alpha
Helix 23	AC5	D	526	535	Right-handed alpha
Helix 24	AC6	D	562	577	Right-handed alpha
Helix 25	AC7	D	596	601	Right-handed alpha
Helix 26	AC8	D	602	604	Right-handed 310
Helix 27	AC9	D	609	622	Right-handed alpha
Helix 28	AD1	D	623	631	Right-handed alpha
Helix 29	AD2	D	665	676	Right-handed alpha
Helix 30	AD3	D	681	698	Right-handed alpha
Helix 31	AD4	D	713	734	Right-handed alpha
Helix 32	AD5	D	734	743	Right-handed alpha
Helix 33	AD6	D	746	751	Right-handed 310
Helix 34	AD7	D	759	766	Right-handed alpha
Helix 35	AD8	E	481	492	Right-handed alpha
Helix 36	AD9	E	524	547	Right-handed alpha
Helix 37	AE1	E	562	572	Right-handed alpha
Helix 38	AE2	E	572	578	Right-handed alpha
Helix 39	AE3	E	602	609	Right-handed alpha
Helix 40	AE4	E	611	628	Right-handed alpha
Helix 41	AE5	E	649	657	Right-handed 310
Helix 42	AE6	E	658	673	Right-handed alpha
Helix 43	AE7	E	681	693	Right-handed alpha

There are 10 sheets in PDB entry 6SNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	543	first strand
Strand 2	A	548	553	anti-parallel
Strand 3	A	556	561	anti-parallel
Strand 4	A	753	758	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	585	first strand
Strand 2	A	647	652	anti-parallel
Strand 3	A	634	637	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	494	499	first strand
Strand 2	B	503	507	anti-parallel
Strand 3	B	519	523	anti-parallel
Strand 4	B	708	710	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	552	553	first strand
Strand 2	B	593	600	anti-parallel
Strand 3	B	558	561	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	552	553	first strand
Strand 2	B	593	600	anti-parallel
Strand 3	B	582	586	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	537	543	first strand
Strand 2	D	548	553	anti-parallel
Strand 3	D	556	561	anti-parallel
Strand 4	D	753	758	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	584	585	first strand
Strand 2	D	647	652	anti-parallel
Strand 3	D	634	637	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	494	499	first strand
Strand 2	E	503	507	anti-parallel
Strand 3	E	519	523	anti-parallel
Strand 4	E	708	710	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	551	553	first strand
Strand 2	E	594	601	anti-parallel
Strand 3	E	558	560	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	551	553	first strand
Strand 2	E	594	601	anti-parallel
Strand 3	E	582	586	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SNV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SNV