Analysis of interatomic Contacts of Structural Units in PDB entry:
6SNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SNW entry

There are 5 chains in PDB entry 6SNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2ASN 297
B
 SER 10GLN 255
C
 GLY 1GLN 240
D
 THR 28LEU 68
E
 GLY 29LYS 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6SNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 13Right-handed alpha
Helix 2
AA2
A
49 53Right-handed 310
Helix 3
AA3
A
59 63Right-handed 310
Helix 4
AA4
A
75 78Right-handed 310
Helix 5
AA5
A
79 84Right-handed alpha
Helix 6
AA6
A
111 114Right-handed 310
Helix 7
AA7
A
115 123Right-handed alpha
Helix 8
AA8
A
167 172Right-handed 310
Helix 9
AA9
B
35 37Right-handed 310
Helix 10
AB1
B
89 97Right-handed alpha
Helix 11
AB2
B
140 144Right-handed 310
Helix 12
AB3
B
148 153Right-handed alpha
Helix 13
AB4
B
163 167Right-handed 310
Helix 14
AB5
B
172 176Right-handed 310
Helix 15
AB6
C
43 48Right-handed alpha
Helix 16
AB7
C
64 66Right-handed 310
Helix 17
AB8
C
92 96Right-handed 310
Helix 18
AB9
C
97 105Right-handed alpha
Helix 19
AC1
C
143 148Right-handed alpha
Helix 20
AC2
C
183 188Right-handed 310
Helix 21
AC3
E
144 154Right-handed alpha
Helix 22
AC4
E
174 178Right-handed 310
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There are 19 sheets in PDB entry 6SNW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 92first strand
Strand 2
A
249 262anti-parallel
Strand 3
A
125 136anti-parallel
Strand 4
A
200 201anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 92first strand
Strand 2
A
249 262anti-parallel
Strand 3
A
125 136anti-parallel
Strand 4
A
187 191anti-parallel
Strand 5
C
22 23parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
244 246anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
231 236anti-parallel
Strand 3
A
149 155anti-parallel
Strand 4
A
177 181anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
23 24anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
191 195parallel
Strand 3
B
99 111anti-parallel
Strand 4
B
233 239anti-parallel
Strand 5
B
69 71anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
233 239anti-parallel
Strand 3
B
99 111anti-parallel
Strand 4
B
241 249anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 82first strand
Strand 2
B
213 218anti-parallel
Strand 3
B
121 128anti-parallel
Strand 4
B
181 185anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
209 218anti-parallel
Strand 3
C
68 72anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
209 218anti-parallel
Strand 3
C
113 119anti-parallel
Strand 4
C
162 167anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 85first strand
Strand 2
C
191 201anti-parallel
Strand 3
C
126 134anti-parallel
Strand 4
C
152 156anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 177first strand
Strand 2
C
108 110anti-parallel
Strand 3
C
223 224anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
94 96first strand
Strand 2
E
106 108anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
119 124first strand
Strand 2
E
203 207anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
136 138first strand
Strand 2
E
166 168anti-parallel
Strand 3
E
161 162anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
240 241first strand
Strand 2
E
298 304anti-parallel
Strand 3
E
244 245anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
240 241first strand
Strand 2
E
298 304anti-parallel
Strand 3
E
267 272anti-parallel
Strand 4
E
278 283anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
291 294first strand
Strand 2
E
251 255anti-parallel
Strand 3
E
319 321anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
258 260first strand
Strand 2
E
313 315anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il