Analysis of interatomic Contacts of Structural Units in PDB entry:
6SO5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SO5 entry

There are 6 chains in PDB entry 6SO5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 24PRO 344
B
 LEU 24PRO 344
C
 ALA 5PRO 172
D
 ALA 5PRO 172
E
 ARG 189TRP 291
F
 PHE 191TRP 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 6SO5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 34Right-handed alpha
Helix 2
AA2
A
49 63Right-handed alpha
Helix 3
AA3
A
77 84Right-handed alpha
Helix 4
AA4
A
105 112Right-handed alpha
Helix 5
AA5
A
115 122Right-handed alpha
Helix 6
AA6
A
125 139Right-handed alpha
Helix 7
AA7
A
140 159Right-handed alpha
Helix 8
AA8
A
174 176Right-handed 310
Helix 9
AA9
A
177 203Right-handed alpha
Helix 10
AB1
A
215 238Right-handed alpha
Helix 11
AB2
A
251 268Right-handed alpha
Helix 12
AB3
A
289 310Right-handed alpha
Helix 13
AB4
A
326 340Right-handed alpha
Helix 14
AB5
B
28 33Right-handed alpha
Helix 15
AB6
B
49 64Right-handed alpha
Helix 16
AB7
B
77 84Right-handed alpha
Helix 17
AB8
B
106 119Right-handed alpha
Helix 18
AB9
B
128 134Right-handed alpha
Helix 19
AC1
B
142 157Right-handed alpha
Helix 20
AC2
B
175 182Right-handed 310
Helix 21
AC3
B
183 188Right-handed alpha
Helix 22
AC4
B
221 238Right-handed alpha
Helix 23
AC5
B
251 268Right-handed alpha
Helix 24
AC6
B
289 308Right-handed alpha
Helix 25
AC7
B
327 338Right-handed alpha
Helix 26
AC8
C
6 27Right-handed alpha
Helix 27
AC9
C
27 61Right-handed alpha
Helix 28
AD1
C
68 124Right-handed alpha
Helix 29
AD2
C
150 171Right-handed alpha
Helix 30
AD3
D
6 28Right-handed alpha
Helix 31
AD4
D
28 62Right-handed alpha
Helix 32
AD5
D
64 124Right-handed alpha
Helix 33
AD6
D
150 171Right-handed alpha
Helix 34
AD7
E
190 208Right-handed alpha
Helix 35
AD8
E
214 231Right-handed alpha
Helix 36
AD9
E
243 251Right-handed alpha
Helix 37
AE1
E
253 291Right-handed alpha
Helix 38
AE2
F
192 209Right-handed alpha
Helix 39
AE3
F
215 229Right-handed alpha
Helix 40
AE4
F
243 251Right-handed alpha
Helix 41
AE5
F
252 291Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6SO5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
162 164parallel
Strand 3
A
39 43parallel
Strand 4
A
242 247parallel
Strand 5
A
272 276parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
101 102anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
162 164parallel
Strand 3
B
39 43parallel
Strand 4
B
242 249parallel
Strand 5
B
272 278parallel
Strand 6
B
314 316parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il