Analysis of interatomic Contacts of Structural Units in PDB entry:
6SO7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SO7 entry

There are 5 chains in PDB entry 6SO7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 24ILE 806
B
LEU 22ARG 392
C
CYS 25ARG 83
D
GLU 26SER 243
E
GLU 24LEU 110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 6SO7. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
38 44Right-handed alpha
Helix 2
AA2
A
55 68Right-handed alpha
Helix 3
AA3
A
106 117Right-handed alpha
Helix 4
AA4
A
126 129Right-handed 310
Helix 5
AA5
A
130 145Right-handed alpha
Helix 6
AA6
A
189 195Right-handed alpha
Helix 7
AA7
A
215 231Right-handed alpha
Helix 8
AA8
A
280 287Right-handed alpha
Helix 9
AA9
A
297 315Right-handed alpha
Helix 10
AB1
A
361 367Right-handed alpha
Helix 11
AB2
A
378 391Right-handed alpha
Helix 12
AB3
A
542 553Right-handed alpha
Helix 13
AB4
A
647 651Right-handed 310
Helix 14
AB5
A
726 731Right-handed alpha
Helix 15
AB6
C
39 44Right-handed 310
Helix 16
AB7
D
31 45Right-handed alpha
Helix 17
AB8
D
47 62Right-handed alpha
Helix 18
AB9
D
67 82Right-handed alpha
Helix 19
AC1
D
84 97Right-handed alpha
Helix 20
AC2
D
104 121Right-handed alpha
Helix 21
AC3
D
123 127Right-handed 310
Helix 22
AC4
D
137 154Right-handed alpha
Helix 23
AC5
D
159 189Right-handed alpha
Helix 24
AC6
D
190 205Right-handed alpha
Helix 25
AC7
D
208 225Right-handed alpha
Helix 26
AC8
D
227 241Right-handed alpha
Helix 27
AC9
E
39 45Right-handed alpha
Helix 28
AD1
E
51 60Right-handed alpha
Back to top of page

There are 18 sheets in PDB entry 6SO7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
31 32first strand
Strand 2
A
83 89parallel
Strand 3
A
74 80anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
96 100first strand
Strand 2
A
163 174parallel
Strand 3
A
146 157anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
176 179first strand
Strand 2
A
253 261parallel
Strand 3
A
182 183parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
176 179first strand
Strand 2
A
253 261parallel
Strand 3
A
239 245anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
294 295first strand
Strand 2
A
267 275anti-parallel
Strand 3
A
335 341parallel
Strand 4
A
322 326anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
349 355first strand
Strand 2
A
412 420parallel
Strand 3
A
395 398anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
349 355first strand
Strand 2
A
412 420parallel
Strand 3
A
402 404anti-parallel
Back to list of sheets
Back to top of page

There are 16 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
425 426first strand
Strand 2
A
440 445anti-parallel
Strand 3
A
455 462anti-parallel
Strand 4
A
466 475anti-parallel
Strand 5
A
485 494anti-parallel
Strand 6
A
505 518anti-parallel
Strand 7
A
523 537anti-parallel
Strand 8
A
565 579anti-parallel
Strand 9
A
590 600anti-parallel
Strand 10
A
609 620anti-parallel
Strand 11
A
628 637anti-parallel
Strand 12
A
710 719anti-parallel
Strand 13
A
734 745anti-parallel
Strand 14
A
767 778anti-parallel
Strand 15
A
781 792anti-parallel
Strand 16
A
802 804anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
671 673first strand
Strand 2
A
701 705anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
45 49first strand
Strand 2
B
388 391anti-parallel
Strand 3
B
378 379anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
66 68first strand
Strand 2
B
71 75anti-parallel
Strand 3
B
80 85anti-parallel
Strand 4
B
90 96anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
116 117first strand
Strand 2
B
122 123anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
156 158first strand
Strand 2
B
161 165anti-parallel
Strand 3
B
170 175anti-parallel
Strand 4
B
181 186anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
201 203first strand
Strand 2
B
206 208anti-parallel
Strand 3
B
215 220anti-parallel
Strand 4
B
225 231anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
257 261first strand
Strand 2
B
267 271anti-parallel
Strand 3
B
279 281anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
288 289first strand
Strand 2
B
296 299anti-parallel
Strand 3
B
305 308anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
331 333first strand
Strand 2
B
336 338anti-parallel
Strand 3
B
348 349anti-parallel
Strand 4
B
356 358anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
75 79first strand
Strand 2
E
87 95anti-parallel
Strand 3
E
101 107anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il