Analysis of interatomic Contacts of Structural Units in PDB entry:
6SOG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SOG entry

There are 5 chains in PDB entry 6SOG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 24ILE 806
B
 LEU 22ARG 392
C
 CYS 25ARG 83
D
 GLU 26SER 243
E
 GLU 24LEU 110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6SOG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 46Right-handed alpha
Helix 2
AA2
A
55 68Right-handed alpha
Helix 3
AA3
A
106 117Right-handed alpha
Helix 4
AA4
A
127 145Right-handed alpha
Helix 5
AA5
A
189 196Right-handed alpha
Helix 6
AA6
A
215 232Right-handed alpha
Helix 7
AA7
A
280 287Right-handed alpha
Helix 8
AA8
A
297 315Right-handed alpha
Helix 9
AA9
A
361 367Right-handed alpha
Helix 10
AB1
A
378 391Right-handed alpha
Helix 11
AB2
A
446 451Right-handed alpha
Helix 12
AB3
A
542 552Right-handed alpha
Helix 13
AB4
A
647 651Right-handed 310
Helix 14
AB5
A
726 731Right-handed alpha
Helix 15
AB6
C
39 44Right-handed alpha
Helix 16
AB7
C
76 80Right-handed 310
Helix 17
AB8
D
31 45Right-handed alpha
Helix 18
AB9
D
47 62Right-handed alpha
Helix 19
AC1
D
67 82Right-handed alpha
Helix 20
AC2
D
84 99Right-handed alpha
Helix 21
AC3
D
104 121Right-handed alpha
Helix 22
AC4
D
123 129Right-handed 310
Helix 23
AC5
D
137 154Right-handed alpha
Helix 24
AC6
D
159 189Right-handed alpha
Helix 25
AC7
D
190 205Right-handed alpha
Helix 26
AC8
D
208 225Right-handed alpha
Helix 27
AC9
D
227 242Right-handed alpha
Helix 28
AD1
E
39 45Right-handed alpha
Helix 29
AD2
E
51 59Right-handed alpha
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There are 19 sheets in PDB entry 6SOG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
83 89parallel
Strand 3
A
74 80anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 100first strand
Strand 2
A
163 174parallel
Strand 3
A
146 157anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 183first strand
Strand 2
A
253 261parallel
Strand 3
A
239 247anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
A
267 275anti-parallel
Strand 3
A
334 341parallel
Strand 4
A
322 329anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 355first strand
Strand 2
A
412 420parallel
Strand 3
A
395 398anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 355first strand
Strand 2
A
412 420parallel
Strand 3
A
401 404anti-parallel
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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 445first strand
Strand 2
A
455 462anti-parallel
Strand 3
A
467 475anti-parallel
Strand 4
A
484 494anti-parallel
Strand 5
A
505 518anti-parallel
Strand 6
A
524 537anti-parallel
Strand 7
A
565 577anti-parallel
Strand 8
A
594 600anti-parallel
Strand 9
A
608 614anti-parallel
Strand 10
A
628 640anti-parallel
Strand 11
A
710 720anti-parallel
Strand 12
A
744 745anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 581first strand
Strand 2
A
590 591anti-parallel
Strand 3
A
617 620anti-parallel
Strand 4
A
628 640anti-parallel
Strand 5
A
710 720anti-parallel
Strand 6
A
734 742anti-parallel
Strand 7
A
767 778anti-parallel
Strand 8
A
781 792anti-parallel
Strand 9
A
802 805anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
671 674first strand
Strand 2
A
700 705anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
388 389anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 68first strand
Strand 2
B
71 73anti-parallel
Strand 3
B
80 85anti-parallel
Strand 4
B
91 96anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 118first strand
Strand 2
B
121 125anti-parallel
Strand 3
B
130 135anti-parallel
Strand 4
B
141 146anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
161 165anti-parallel
Strand 3
B
170 174anti-parallel
Strand 4
B
181 186anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 203first strand
Strand 2
B
206 209anti-parallel
Strand 3
B
215 220anti-parallel
Strand 4
B
226 231anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 262first strand
Strand 2
B
266 271anti-parallel
Strand 3
B
277 281anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 292first strand
Strand 2
B
295 300anti-parallel
Strand 3
B
305 308anti-parallel
Strand 4
B
315 319anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 333first strand
Strand 2
B
336 340anti-parallel
Strand 3
B
345 350anti-parallel
Strand 4
B
356 361anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 34first strand
Strand 2
E
77 79anti-parallel
Strand 3
E
87 95anti-parallel
Strand 4
E
73 74anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 34first strand
Strand 2
E
77 79anti-parallel
Strand 3
E
87 95anti-parallel
Strand 4
E
101 107anti-parallel
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