Analysis of interatomic Contacts of Structural Units in PDB entry:
6SOH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SOH entry

There are 5 chains in PDB entry 6SOH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 24	ILE 806
B	LEU 22	ARG 392
C	CYS 25	ARG 83
D	GLU 26	SER 243
E	GLU 24	LEU 110

There are 31 helices in PDB entry 6SOH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	55	68	Right-handed alpha
Helix 3	AA3	A	106	117	Right-handed alpha
Helix 4	AA4	A	129	145	Right-handed alpha
Helix 5	AA5	A	159	161	Right-handed 310
Helix 6	AA6	A	189	195	Right-handed alpha
Helix 7	AA7	A	216	232	Right-handed alpha
Helix 8	AA8	A	280	288	Right-handed alpha
Helix 9	AA9	A	297	315	Right-handed alpha
Helix 10	AB1	A	361	367	Right-handed alpha
Helix 11	AB2	A	380	393	Right-handed alpha
Helix 12	AB3	A	448	452	Right-handed 310
Helix 13	AB4	A	542	552	Right-handed alpha
Helix 14	AB5	A	647	651	Right-handed 310
Helix 15	AB6	A	753	757	Right-handed 310
Helix 16	AB7	C	63	67	Right-handed 310
Helix 17	AB8	C	76	80	Right-handed 310
Helix 18	AB9	D	31	46	Right-handed alpha
Helix 19	AC1	D	47	62	Right-handed alpha
Helix 20	AC2	D	67	80	Right-handed alpha
Helix 21	AC3	D	81	83	Right-handed 310
Helix 22	AC4	D	84	99	Right-handed alpha
Helix 23	AC5	D	104	119	Right-handed alpha
Helix 24	AC6	D	123	127	Right-handed 310
Helix 25	AC7	D	137	154	Right-handed alpha
Helix 26	AC8	D	159	189	Right-handed alpha
Helix 27	AC9	D	190	205	Right-handed alpha
Helix 28	AD1	D	208	225	Right-handed alpha
Helix 29	AD2	D	227	241	Right-handed alpha
Helix 30	AD3	E	39	46	Right-handed alpha
Helix 31	AD4	E	51	57	Right-handed alpha

There are 18 sheets in PDB entry 6SOH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	80	first strand
Strand 2	A	83	87	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	157	first strand
Strand 2	A	163	171	anti-parallel
Strand 3	A	94	100	parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	329	first strand
Strand 2	A	334	342	anti-parallel
Strand 3	A	267	276	parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	404	first strand
Strand 2	A	412	417	anti-parallel
Strand 3	A	349	355	parallel

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There are 12 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	445	first strand
Strand 2	A	455	462	anti-parallel
Strand 3	A	466	475	anti-parallel
Strand 4	A	484	494	anti-parallel
Strand 5	A	505	518	anti-parallel
Strand 6	A	523	537	anti-parallel
Strand 7	A	565	578	anti-parallel
Strand 8	A	594	600	anti-parallel
Strand 9	A	609	619	anti-parallel
Strand 10	A	629	637	anti-parallel
Strand 11	A	710	718	anti-parallel
Strand 12	A	741	745	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	720	first strand
Strand 2	A	734	738	anti-parallel
Strand 3	A	768	778	anti-parallel
Strand 4	A	781	792	anti-parallel
Strand 5	A	802	804	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	183	first strand
Strand 2	A	253	261	parallel
Strand 3	A	239	247	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	73	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	126	first strand
Strand 2	B	130	135	anti-parallel
Strand 3	B	140	146	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	163	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	211	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	226	231	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	262	first strand
Strand 2	B	266	271	anti-parallel
Strand 3	B	277	281	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	291	first strand
Strand 2	B	296	299	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	346	349	anti-parallel
Strand 4	B	358	360	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	84	first strand
Strand 2	B	91	96	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	175	first strand
Strand 2	B	180	186	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	308	first strand
Strand 2	B	315	319	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	34	first strand
Strand 2	E	75	80	anti-parallel
Strand 3	E	87	95	anti-parallel
Strand 4	E	101	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SOH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SOH