Analysis of interatomic Contacts of Structural Units in PDB entry:
6SOV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SOV entry

There is 1 chain in PDB entry 6SOV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6GLU 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6SOV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 78Right-handed alpha
Helix 2
AA2
A
95 99Right-handed 310
Helix 3
AA3
A
113 118Right-handed alpha
Helix 4
AA4
A
123 144Right-handed alpha
Helix 5
AA5
A
152 154Right-handed 310
Helix 6
AA6
A
190 195Right-handed alpha
Helix 7
AA7
A
203 219Right-handed alpha
Helix 8
AA8
A
227 240Right-handed alpha
Helix 9
AA9
A
243 248Right-handed alpha
Helix 10
AB1
A
252 262Right-handed alpha
Helix 11
AB2
A
269 273Right-handed 310
Helix 12
AB3
A
278 289Right-handed alpha
Helix 13
AB4
A
298 304Right-handed alpha
Helix 14
AB5
A
305 309Right-handed 310
Helix 15
AB6
A
313 317Right-handed 310
Helix 16
AB7
A
325 330Right-handed 310
Helix 17
AB8
A
333 348Right-handed alpha
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There are 3 sheets in PDB entry 6SOV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 13first strand
Strand 2
A
16 21anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 33first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
49 55anti-parallel
Strand 4
A
103 107anti-parallel
Strand 5
A
88 90anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
156 158anti-parallel
Strand 3
A
164 166anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il