Analysis of interatomic Contacts of Structural Units in PDB entry:
6SP4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SP4 entry

There are 6 chains in PDB entry 6SP4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 326	THR 609
B	GLY 325	THR 609
C	ARG 326	THR 609
D	ARG 326	THR 609
E	ARG 326	THR 609
F	VAL 324	THR 609

There are no helices in PDB entry 6SP4

There are 44 sheets in PDB entry 6SP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	354	first strand
Strand 2	A	342	345	anti-parallel
Strand 3	A	327	331	anti-parallel
Strand 4	A	605	609	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	380	381	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	370	first strand
Strand 2	A	373	377	anti-parallel
Strand 3	A	394	397	anti-parallel
Strand 4	A	402	405	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	421	first strand
Strand 2	A	424	428	anti-parallel
Strand 3	A	440	444	anti-parallel
Strand 4	A	449	453	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	432	first strand
Strand 2	A	435	436	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	467	first strand
Strand 2	A	472	475	anti-parallel
Strand 3	A	489	491	anti-parallel
Strand 4	A	496	498	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	512	first strand
Strand 2	A	519	525	anti-parallel
Strand 3	A	530	538	anti-parallel
Strand 4	A	543	547	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	561	first strand
Strand 2	A	566	569	anti-parallel
Strand 3	A	580	584	anti-parallel
Strand 4	A	591	596	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	354	first strand
Strand 2	B	342	345	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	605	609	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	370	first strand
Strand 2	B	373	380	anti-parallel
Strand 3	B	389	397	anti-parallel
Strand 4	B	402	405	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	421	first strand
Strand 2	B	424	428	anti-parallel
Strand 3	B	440	444	anti-parallel
Strand 4	B	449	453	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	432	first strand
Strand 2	B	435	436	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	468	first strand
Strand 2	B	471	475	anti-parallel
Strand 3	B	487	491	anti-parallel
Strand 4	B	496	499	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	514	first strand
Strand 2	B	518	525	anti-parallel
Strand 3	B	530	538	anti-parallel
Strand 4	B	544	547	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	558	562	first strand
Strand 2	B	565	572	anti-parallel
Strand 3	B	577	584	anti-parallel
Strand 4	B	591	596	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	354	first strand
Strand 2	C	342	346	anti-parallel
Strand 3	C	328	331	anti-parallel
Strand 4	C	605	608	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	380	first strand
Strand 2	C	389	397	anti-parallel
Strand 3	C	402	405	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	421	first strand
Strand 2	C	424	428	anti-parallel
Strand 3	C	440	443	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	431	432	first strand
Strand 2	C	435	436	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	468	first strand
Strand 2	C	471	478	anti-parallel
Strand 3	C	483	491	anti-parallel
Strand 4	C	496	500	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	511	515	first strand
Strand 2	C	518	525	anti-parallel
Strand 3	C	530	537	anti-parallel
Strand 4	C	544	546	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	558	562	first strand
Strand 2	C	565	572	anti-parallel
Strand 3	C	577	585	anti-parallel
Strand 4	C	590	595	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	354	first strand
Strand 2	D	342	345	anti-parallel
Strand 3	D	328	331	anti-parallel
Strand 4	D	605	608	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	362	370	first strand
Strand 2	D	373	381	anti-parallel
Strand 3	D	393	397	anti-parallel
Strand 4	D	402	406	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	421	first strand
Strand 2	D	424	428	anti-parallel
Strand 3	D	440	444	anti-parallel
Strand 4	D	449	453	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	432	first strand
Strand 2	D	435	436	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	464	468	first strand
Strand 2	D	471	478	anti-parallel
Strand 3	D	483	491	anti-parallel
Strand 4	D	496	500	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	511	515	first strand
Strand 2	D	518	525	anti-parallel
Strand 3	D	530	538	anti-parallel
Strand 4	D	543	546	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	558	561	first strand
Strand 2	D	566	569	anti-parallel
Strand 3	D	578	585	anti-parallel
Strand 4	D	590	601	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	352	355	first strand
Strand 2	E	338	345	anti-parallel
Strand 3	E	327	334	anti-parallel
Strand 4	E	605	609	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	362	363	first strand
Strand 2	E	380	381	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	377	first strand
Strand 2	E	393	397	anti-parallel
Strand 3	E	402	405	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	417	420	first strand
Strand 2	E	425	428	anti-parallel
Strand 3	E	440	444	anti-parallel
Strand 4	E	449	452	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	431	432	first strand
Strand 2	E	435	436	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	472	478	first strand
Strand 2	E	483	490	anti-parallel
Strand 3	E	497	500	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	511	514	first strand
Strand 2	E	519	525	anti-parallel
Strand 3	E	530	537	anti-parallel
Strand 4	E	544	546	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	558	561	first strand
Strand 2	E	566	572	anti-parallel
Strand 3	E	577	585	anti-parallel
Strand 4	E	590	596	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	351	354	first strand
Strand 2	F	342	346	anti-parallel
Strand 3	F	328	331	anti-parallel
Strand 4	F	605	608	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	374	377	first strand
Strand 2	F	393	397	anti-parallel
Strand 3	F	402	406	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	417	421	first strand
Strand 2	F	424	428	anti-parallel
Strand 3	F	440	444	anti-parallel
Strand 4	F	449	453	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	431	432	first strand
Strand 2	F	435	436	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	464	468	first strand
Strand 2	F	471	478	anti-parallel
Strand 3	F	483	491	anti-parallel
Strand 4	F	496	499	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	511	514	first strand
Strand 2	F	519	522	anti-parallel
Strand 3	F	534	538	anti-parallel
Strand 4	F	543	547	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	558	561	first strand
Strand 2	F	566	572	anti-parallel
Strand 3	F	577	585	anti-parallel
Strand 4	F	590	596	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SP4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SP4