Analysis of interatomic Contacts of Structural Units in PDB entry:
6SPD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SPD entry

There are 32 chains in PDB entry 6SPD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G 2	C 2888
B	U 3	U 118
C	ILE 3	LYS 273
D	ILE 3	ALA 209
E	GLN 2	GLY 200
F	ARG 3	PHE 177
G	SER 2	ALA 174
H	GLU 2	GLU 148
I	LYS 3	GLY 142
J	LYS 2	ILE 142
K	MET 1	GLU 120
L	GLN 2	ASP 144
M	MET 1	THR 135
N	MET 1	ARG 118
O	SER 2	PHE 116
P	LYS 4	VAL 116
Q	ALA 2	ALA 118
R	MET 1	ALA 103
S	GLU 2	LYS 110
T	ASN 2	ASP 93
U	MET 1	GLN 103
V	PHE 4	ARG 191
W	THR 10	ALA 85
X	SER 2	PHE 78
Y	LYS 1	GLN 60
Z	ALA 2	GLY 58
1	LYS 2	ILE 32
2	ALA 2	VAL 54
3	ARG 2	LYS 51
4	MET 1	VAL 44
5	PRO 2	ARG 64
6	MET 1	GLY 38

There are 92 helices in PDB entry 6SPD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	30	32	Right-handed 310
Helix 2	AA2	C	207	213	Right-handed alpha
Helix 3	AA3	D	40	45	Right-handed alpha
Helix 4	AA4	D	62	69	Right-handed alpha
Helix 5	AA5	D	97	101	Right-handed 310
Helix 6	AA6	D	120	126	Right-handed alpha
Helix 7	AA7	E	23	36	Right-handed alpha
Helix 8	AA8	E	96	108	Right-handed alpha
Helix 9	AA9	E	109	114	Right-handed alpha
Helix 10	AB1	E	129	141	Right-handed alpha
Helix 11	AB2	E	153	159	Right-handed alpha
Helix 12	AB3	E	190	199	Right-handed alpha
Helix 13	AB4	F	4	11	Right-handed alpha
Helix 14	AB5	F	11	20	Right-handed alpha
Helix 15	AB6	F	49	62	Right-handed alpha
Helix 16	AB7	F	92	95	Right-handed 310
Helix 17	AB8	F	96	101	Right-handed alpha
Helix 18	AB9	F	162	168	Right-handed alpha
Helix 19	AC1	G	63	81	Right-handed alpha
Helix 20	AC2	G	137	150	Right-handed alpha
Helix 21	AC3	H	22	29	Right-handed alpha
Helix 22	AC4	H	43	48	Right-handed alpha
Helix 23	AC5	H	50	58	Right-handed alpha
Helix 24	AC6	H	60	67	Right-handed alpha
Helix 25	AC7	H	96	102	Right-handed alpha
Helix 26	AC8	I	35	37	Right-handed 310
Helix 27	AC9	I	38	43	Right-handed alpha
Helix 28	AD1	I	78	85	Right-handed alpha
Helix 29	AD2	I	105	110	Right-handed alpha
Helix 30	AD3	I	111	113	Right-handed 310
Helix 31	AD4	I	122	132	Right-handed alpha
Helix 32	AD5	J	24	38	Right-handed alpha
Helix 33	AD6	J	67	71	Right-handed 310
Helix 34	AD7	J	88	96	Right-handed alpha
Helix 35	AD8	J	99	107	Right-handed alpha
Helix 36	AD9	J	114	119	Right-handed alpha
Helix 37	AE1	L	37	41	Right-handed 310
Helix 38	AE2	L	56	60	Right-handed 310
Helix 39	AE3	L	69	72	Right-handed 310
Helix 40	AE4	L	80	85	Right-handed 310
Helix 41	AE5	L	93	98	Right-handed alpha
Helix 42	AE6	L	128	136	Right-handed alpha
Helix 43	AE7	M	45	59	Right-handed alpha
Helix 44	AE8	M	110	116	Right-handed alpha
Helix 45	AE9	M	117	123	Right-handed alpha
Helix 46	AF1	N	13	32	Right-handed alpha
Helix 47	AF2	N	38	42	Right-handed alpha
Helix 48	AF3	N	43	47	Right-handed 310
Helix 49	AF4	N	48	53	Right-handed alpha
Helix 50	AF5	N	54	57	Right-handed 310
Helix 51	AF6	N	59	68	Right-handed alpha
Helix 52	AF7	N	72	79	Right-handed alpha
Helix 53	AF8	O	3	22	Right-handed alpha
Helix 54	AF9	O	66	84	Right-handed alpha
Helix 55	AG1	O	100	112	Right-handed alpha
Helix 56	AG2	P	5	10	Right-handed alpha
Helix 57	AG3	P	98	102	Right-handed 310
Helix 58	AG4	Q	8	21	Right-handed alpha
Helix 59	AG5	Q	31	36	Right-handed alpha
Helix 60	AG6	Q	36	71	Right-handed alpha
Helix 61	AG7	Q	76	84	Right-handed alpha
Helix 62	AG8	Q	91	99	Right-handed alpha
Helix 63	AG9	Q	102	117	Right-handed alpha
Helix 64	AH1	S	13	25	Right-handed alpha
Helix 65	AH2	S	28	38	Right-handed alpha
Helix 66	AH3	S	41	60	Right-handed alpha
Helix 67	AH4	T	16	26	Right-handed alpha
Helix 68	AH5	T	43	48	Right-handed alpha
Helix 69	AH6	V	16	25	Right-handed alpha
Helix 70	AH7	V	49	56	Right-handed alpha
Helix 71	AH8	V	57	62	Right-handed 310
Helix 72	AH9	V	117	122	Right-handed alpha
Helix 73	AI1	V	173	178	Right-handed alpha
Helix 74	AI2	W	73	76	Right-handed 310
Helix 75	AI3	X	53	63	Right-handed alpha
Helix 76	AI4	X	64	73	Right-handed alpha
Helix 77	AI5	Y	2	7	Right-handed alpha
Helix 78	AI6	Y	10	34	Right-handed alpha
Helix 79	AI7	Y	39	44	Right-handed alpha
Helix 80	AI8	Y	46	59	Right-handed alpha
Helix 81	AI9	Z	18	27	Right-handed alpha
Helix 82	AJ1	Z	42	50	Right-handed alpha
Helix 83	AJ2	1	8	13	Right-handed alpha
Helix 84	AJ3	2	9	15	Right-handed alpha
Helix 85	AJ4	2	16	19	Right-handed 310
Helix 86	AJ5	4	9	17	Right-handed alpha
Helix 87	AJ6	4	17	22	Right-handed alpha
Helix 88	AJ7	4	25	38	Right-handed alpha
Helix 89	AJ8	5	9	14	Right-handed alpha
Helix 90	AJ9	5	36	41	Right-handed alpha
Helix 91	AK1	5	50	61	Right-handed alpha
Helix 92	AK2	6	30	34	Right-handed 310

There are 52 sheets in PDB entry 6SPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	17	18	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	61	63	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	116	117	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	82	first strand
Strand 2	C	91	96	anti-parallel
Strand 3	C	99	105	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	189	192	anti-parallel
Strand 3	C	140	142	anti-parallel
Strand 4	C	162	164	anti-parallel
Strand 5	C	171	175	anti-parallel
Strand 6	C	181	185	anti-parallel
Strand 7	C	268	270	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	201	205	anti-parallel
Strand 3	D	104	111	anti-parallel
Strand 4	D	170	181	anti-parallel
Strand 5	D	186	190	anti-parallel
Strand 6	D	22	29	anti-parallel
Strand 7	D	9	16	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	39	first strand
Strand 2	D	48	52	anti-parallel
Strand 3	D	81	84	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	120	first strand
Strand 2	E	184	188	parallel
Strand 3	E	145	148	parallel
Strand 4	E	167	169	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	36	first strand
Strand 2	F	155	158	anti-parallel
Strand 3	F	127	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	132	first strand
Strand 2	F	152	153	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	17	first strand
Strand 2	G	23	27	anti-parallel
Strand 3	G	34	37	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	45	first strand
Strand 2	G	50	53	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	122	124	first strand
Strand 2	G	130	134	anti-parallel
Strand 3	G	86	88	anti-parallel
Strand 4	G	163	164	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	99	first strand
Strand 2	G	102	106	anti-parallel
Strand 3	G	114	116	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	36	38	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	79	80	first strand
Strand 2	H	145	146	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	130	first strand
Strand 2	H	140	143	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	14	first strand
Strand 2	I	54	56	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	122	124	first strand
Strand 2	J	53	56	parallel
Strand 3	J	15	18	parallel
Strand 4	J	138	139	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	77	first strand
Strand 2	J	84	85	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	7	10	first strand
Strand 2	K	18	24	anti-parallel
Strand 3	K	38	45	anti-parallel
Strand 4	K	59	64	anti-parallel
Strand 5	K	83	87	anti-parallel
Strand 6	K	7	10	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	69	70	first strand
Strand 2	K	76	79	anti-parallel
Strand 3	P	70	76	anti-parallel
Strand 4	P	59	65	anti-parallel
Strand 5	P	47	50	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	74	78	first strand
Strand 2	L	107	111	parallel
Strand 3	L	126	127	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	89	90	first strand
Strand 2	L	121	122	parallel
Strand 3	L	141	142	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	63	66	first strand
Strand 2	M	102	107	anti-parallel
Strand 3	M	32	36	anti-parallel
Strand 4	M	129	133	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	40	42	first strand
Strand 2	M	90	97	anti-parallel
Strand 3	M	72	75	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	37	first strand
Strand 2	N	109	115	anti-parallel
Strand 3	N	95	102	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	48	53	first strand
Strand 2	O	36	41	anti-parallel
Strand 3	O	25	31	anti-parallel
Strand 4	O	89	91	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	39	45	first strand
Strand 2	P	25	34	anti-parallel
Strand 3	P	82	90	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	2	5	first strand
Strand 2	R	38	43	anti-parallel
Strand 3	R	46	49	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	19	22	first strand
Strand 2	R	83	98	anti-parallel
Strand 3	R	59	78	anti-parallel
Strand 4	R	32	35	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	8	first strand
Strand 2	S	101	108	anti-parallel
Strand 3	S	70	78	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	82	87	first strand
Strand 2	S	93	98	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	10	13	first strand
Strand 2	T	28	33	anti-parallel
Strand 3	T	79	86	anti-parallel
Strand 4	T	54	62	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	66	69	first strand
Strand 2	T	72	75	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	10	12	first strand
Strand 2	U	69	72	anti-parallel
Strand 3	U	79	80	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	24	27	first strand
Strand 2	U	32	35	anti-parallel
Strand 3	U	64	65	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	40	44	first strand
Strand 2	U	57	61	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	82	87	first strand
Strand 2	U	91	95	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	5	7	first strand
Strand 2	V	64	67	parallel
Strand 3	V	72	77	anti-parallel
Strand 4	V	94	96	anti-parallel
Strand 5	V	28	34	parallel
Strand 6	V	41	46	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	105	107	first strand
Strand 2	V	134	136	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	125	129	first strand
Strand 2	V	183	189	anti-parallel
Strand 3	V	159	161	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	46	47	first strand
Strand 2	W	77	80	parallel
Strand 3	W	70	72	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	66	67	first strand
Strand 2	W	82	83	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	13	16	first strand
Strand 2	X	26	29	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	33	34	first strand
Strand 2	X	51	52	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	37	39	first strand
Strand 2	X	46	48	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	3	7	first strand
Strand 2	Z	34	38	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	27	29	first strand
Strand 2	2	36	38	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	16	21	first strand
Strand 2	3	3	9	anti-parallel
Strand 3	3	41	46	anti-parallel
Strand 4	3	33	36	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	15	17	first strand
Strand 2	5	20	24	anti-parallel
Strand 3	5	46	48	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	14	19	first strand
Strand 2	6	22	27	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SPD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SPD