Analysis of interatomic Contacts of Structural Units in PDB entry:
6SQC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SQC entry

There are 4 chains in PDB entry 6SQC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1689GLN 2112
B
 SER 1043THR 1054
B
 LEU 1056GLU 1075
B
 VAL 1077LEU 1083
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6SQC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1705 1721Right-handed alpha
Helix 2
AA2
A
1731 1740Right-handed alpha
Helix 3
AA3
A
1741 1743Right-handed 310
Helix 4
AA4
A
1755 1762Right-handed alpha
Helix 5
AA5
A
1771 1776Right-handed alpha
Helix 6
AA6
A
1779 1786Right-handed alpha
Helix 7
AA7
A
1820 1830Right-handed alpha
Helix 8
AA8
A
1842 1852Right-handed alpha
Helix 9
AA9
A
1874 1890Right-handed alpha
Helix 10
AB1
A
1898 1908Right-handed alpha
Helix 11
AB2
A
1917 1919Right-handed 310
Helix 12
AB3
A
1920 1927Right-handed alpha
Helix 13
AB4
A
1961 1972Right-handed alpha
Helix 14
AB5
A
1975 1986Right-handed alpha
Helix 15
AB6
A
1993 2000Right-handed alpha
Helix 16
AB7
A
2003 2016Right-handed alpha
Helix 17
AB8
A
2024 2041Right-handed alpha
Helix 18
AB9
A
2045 2056Right-handed alpha
Helix 19
AC1
A
2065 2075Right-handed alpha
Helix 20
AC2
A
2079 2093Right-handed alpha
Helix 21
AC3
A
2093 2111Right-handed alpha
Helix 22
AC4
B
1044 1059Right-handed alpha
Helix 23
AC5
B
1061 1071Right-handed alpha
Helix 24
AC6
B
1072 1081Right-handed alpha
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There are 6 sheets in PDB entry 6SQC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1724 1727first strand
Strand 2
A
1696 1699parallel
Strand 3
A
1748 1752parallel
Strand 4
A
1947 1955anti-parallel
Strand 5
A
1795 1800anti-parallel
Strand 6
A
1990 1991anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1724 1727first strand
Strand 2
A
1696 1699parallel
Strand 3
A
1748 1752parallel
Strand 4
A
1947 1955anti-parallel
Strand 5
A
2017 2018parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1787 1788first strand
Strand 2
A
1791 1792anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1834 1836first strand
Strand 2
A
1911 1916parallel
Strand 3
A
1803 1807anti-parallel
Strand 4
A
1931 1934anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1856 1861first strand
Strand 2
A
1864 1871anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1938 1939first strand
Strand 2
A
1942 1943anti-parallel
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