Analysis of interatomic Contacts of Structural Units in PDB entry:
6SQH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SQH entry

There are 2 chains in PDB entry 6SQH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 52PHE 385
B
 CYS 53MET 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6SQH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 66Right-handed alpha
Helix 2
AA2
A
66 79Right-handed alpha
Helix 3
AA3
A
80 85Right-handed alpha
Helix 4
AA4
A
97 106Right-handed alpha
Helix 5
AA5
A
119 130Right-handed alpha
Helix 6
AA6
A
169 180Right-handed alpha
Helix 7
AA7
A
201 210Right-handed alpha
Helix 8
AA8
A
213 219Right-handed alpha
Helix 9
AA9
A
223 236Right-handed alpha
Helix 10
AB1
A
245 249Right-handed 310
Helix 11
AB2
A
265 273Right-handed alpha
Helix 12
AB3
B
54 66Right-handed alpha
Helix 13
AB4
B
66 79Right-handed alpha
Helix 14
AB5
B
80 85Right-handed alpha
Helix 15
AB6
B
97 106Right-handed alpha
Helix 16
AB7
B
119 130Right-handed alpha
Helix 17
AB8
B
169 180Right-handed alpha
Helix 18
AB9
B
201 210Right-handed alpha
Helix 19
AC1
B
213 219Right-handed alpha
Helix 20
AC2
B
223 236Right-handed alpha
Helix 21
AC3
B
245 249Right-handed 310
Helix 22
AC4
B
265 273Right-handed alpha
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There are 8 sheets in PDB entry 6SQH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 140first strand
Strand 2
A
110 115parallel
Strand 3
A
88 92parallel
Strand 4
A
152 156parallel
Strand 5
A
181 188parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
323 334anti-parallel
Strand 3
A
286 298anti-parallel
Strand 4
A
191 199anti-parallel
Strand 5
A
254 260anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
323 334anti-parallel
Strand 3
A
286 298anti-parallel
Strand 4
A
309 311anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 281first strand
Strand 2
A
339 348anti-parallel
Strand 3
A
356 364anti-parallel
Strand 4
A
370 375anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 140first strand
Strand 2
B
110 115parallel
Strand 3
B
88 92parallel
Strand 4
B
152 157parallel
Strand 5
B
181 188parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 242first strand
Strand 2
B
323 334anti-parallel
Strand 3
B
286 299anti-parallel
Strand 4
B
191 199anti-parallel
Strand 5
B
254 260anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 242first strand
Strand 2
B
323 334anti-parallel
Strand 3
B
286 299anti-parallel
Strand 4
B
308 311anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 281first strand
Strand 2
B
339 348anti-parallel
Strand 3
B
356 364anti-parallel
Strand 4
B
370 375anti-parallel
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