Analysis of interatomic Contacts of Structural Units in PDB entry:
6SR6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SR6 entry

There are 4 chains in PDB entry 6SR6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 9	SER 577
B	ALA 3	ARG 54
C	GLY 11	ALA 578
D	ASN 2	HIS 55

There are 42 helices in PDB entry 6SR6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	13	Right-handed 310
Helix 2	AA2	A	61	67	Right-handed alpha
Helix 3	AA3	A	71	73	Right-handed 310
Helix 4	AA4	A	86	90	Right-handed 310
Helix 5	AA5	A	92	96	Right-handed 310
Helix 6	AA6	A	127	147	Right-handed alpha
Helix 7	AA7	A	162	176	Right-handed alpha
Helix 8	AA8	A	186	196	Right-handed alpha
Helix 9	AA9	A	241	261	Right-handed alpha
Helix 10	AB1	A	266	269	Right-handed 310
Helix 11	AB2	A	270	291	Right-handed alpha
Helix 12	AB3	A	313	320	Right-handed alpha
Helix 13	AB4	A	320	338	Right-handed alpha
Helix 14	AB5	A	341	345	Right-handed 310
Helix 15	AB6	A	352	356	Right-handed 310
Helix 16	AB7	A	357	368	Right-handed alpha
Helix 17	AB8	A	388	402	Right-handed alpha
Helix 18	AB9	A	405	413	Right-handed alpha
Helix 19	AC1	A	414	418	Right-handed alpha
Helix 20	AC2	B	19	21	Right-handed 310
Helix 21	AC3	B	43	54	Right-handed alpha
Helix 22	AC4	C	61	67	Right-handed alpha
Helix 23	AC5	C	71	73	Right-handed 310
Helix 24	AC6	C	86	90	Right-handed 310
Helix 25	AC7	C	92	96	Right-handed 310
Helix 26	AC8	C	127	147	Right-handed alpha
Helix 27	AC9	C	162	176	Right-handed alpha
Helix 28	AD1	C	186	196	Right-handed alpha
Helix 29	AD2	C	241	261	Right-handed alpha
Helix 30	AD3	C	266	269	Right-handed 310
Helix 31	AD4	C	270	291	Right-handed alpha
Helix 32	AD5	C	313	320	Right-handed alpha
Helix 33	AD6	C	320	338	Right-handed alpha
Helix 34	AD7	C	341	345	Right-handed 310
Helix 35	AD8	C	352	356	Right-handed 310
Helix 36	AD9	C	357	368	Right-handed alpha
Helix 37	AE1	C	388	402	Right-handed alpha
Helix 38	AE2	C	405	413	Right-handed alpha
Helix 39	AE3	C	414	418	Right-handed alpha
Helix 40	AE4	D	19	21	Right-handed 310
Helix 41	AE5	D	30	32	Right-handed 310
Helix 42	AE6	D	43	54	Right-handed alpha

There are 18 sheets in PDB entry 6SR6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	24	31	anti-parallel
Strand 3	A	47	48	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	24	31	anti-parallel
Strand 3	A	15	20	anti-parallel
Strand 4	A	152	157	parallel
Strand 5	A	179	185	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	50	54	anti-parallel
Strand 3	A	75	77	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	104	first strand
Strand 2	A	107	112	anti-parallel
Strand 3	A	123	126	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	237	first strand
Strand 2	A	217	225	anti-parallel
Strand 3	A	205	212	anti-parallel
Strand 4	A	347	351	parallel
Strand 5	A	373	375	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	302	first strand
Strand 2	A	305	312	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	449	first strand
Strand 2	A	419	423	anti-parallel
Strand 3	B	34	38	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	426	430	anti-parallel
Strand 3	A	465	479	anti-parallel
Strand 4	A	524	541	anti-parallel
Strand 5	B	23	25	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	576	first strand
Strand 2	A	559	562	anti-parallel
Strand 3	A	546	553	anti-parallel
Strand 4	A	452	459	anti-parallel
Strand 5	B	4	9	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	24	31	anti-parallel
Strand 3	C	47	48	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	24	31	anti-parallel
Strand 3	C	15	20	anti-parallel
Strand 4	C	152	157	parallel
Strand 5	C	179	185	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	60	first strand
Strand 2	C	50	54	anti-parallel
Strand 3	C	75	77	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	104	first strand
Strand 2	C	107	112	anti-parallel
Strand 3	C	123	126	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	237	first strand
Strand 2	C	217	225	anti-parallel
Strand 3	C	205	212	anti-parallel
Strand 4	C	347	351	parallel
Strand 5	C	373	375	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	302	first strand
Strand 2	C	305	312	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	449	first strand
Strand 2	C	419	423	anti-parallel
Strand 3	D	34	38	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	444	first strand
Strand 2	C	426	430	anti-parallel
Strand 3	C	465	479	anti-parallel
Strand 4	C	524	541	anti-parallel
Strand 5	D	23	25	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	571	576	first strand
Strand 2	C	559	565	anti-parallel
Strand 3	C	546	553	anti-parallel
Strand 4	C	452	459	anti-parallel
Strand 5	D	4	9	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SR6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SR6