Analysis of interatomic Contacts of Structural Units in PDB entry:
6SRE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SRE entry

There are 2 chains in PDB entry 6SRE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6PHE 489
B
 GLY 6VAL 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6SRE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 36Right-handed alpha
Helix 2
AA2
A
68 76Right-handed alpha
Helix 3
AA3
A
103 108Right-handed alpha
Helix 4
AA4
A
113 122Right-handed alpha
Helix 5
AA5
A
131 140Right-handed alpha
Helix 6
AA6
A
165 169Right-handed 310
Helix 7
AA7
A
175 186Right-handed alpha
Helix 8
AA8
A
188 213Right-handed alpha
Helix 9
AA9
A
218 235Right-handed alpha
Helix 10
AB1
A
249 253Right-handed 310
Helix 11
AB2
A
299 320Right-handed alpha
Helix 12
AB3
A
325 344Right-handed alpha
Helix 13
AB4
A
350 357Right-handed alpha
Helix 14
AB5
A
359 364Right-handed alpha
Helix 15
AB6
A
393 397Right-handed 310
Helix 16
AB7
A
418 428Right-handed alpha
Helix 17
AB8
A
428 433Right-handed alpha
Helix 18
AB9
A
436 442Right-handed alpha
Helix 19
AC1
A
471 481Right-handed alpha
Helix 20
AC2
B
20 36Right-handed alpha
Helix 21
AC3
B
68 76Right-handed alpha
Helix 22
AC4
B
103 108Right-handed alpha
Helix 23
AC5
B
113 122Right-handed alpha
Helix 24
AC6
B
131 140Right-handed alpha
Helix 25
AC7
B
165 169Right-handed 310
Helix 26
AC8
B
175 186Right-handed alpha
Helix 27
AC9
B
188 213Right-handed alpha
Helix 28
AD1
B
218 235Right-handed alpha
Helix 29
AD2
B
249 253Right-handed 310
Helix 30
AD3
B
299 320Right-handed alpha
Helix 31
AD4
B
325 344Right-handed alpha
Helix 32
AD5
B
350 357Right-handed alpha
Helix 33
AD6
B
359 364Right-handed alpha
Helix 34
AD7
B
393 397Right-handed 310
Helix 35
AD8
B
418 428Right-handed alpha
Helix 36
AD9
B
431 435Right-handed 310
Helix 37
AE1
B
436 441Right-handed alpha
Helix 38
AE2
B
442 444Right-handed 310
Helix 39
AE3
B
471 480Right-handed alpha
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There are 10 sheets in PDB entry 6SRE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
18 19anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
93 97parallel
Strand 3
A
83 87anti-parallel
Strand 4
A
45 49anti-parallel
Strand 5
A
144 145parallel
Strand 6
A
171 172parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 247first strand
Strand 2
A
272 281anti-parallel
Strand 3
A
284 293anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 411first strand
Strand 2
A
453 457anti-parallel
Strand 3
A
462 464anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 416first strand
Strand 2
A
448 450anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
18 19anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 128first strand
Strand 2
B
93 97parallel
Strand 3
B
83 87anti-parallel
Strand 4
B
45 49anti-parallel
Strand 5
B
144 145parallel
Strand 6
B
171 172parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 247first strand
Strand 2
B
272 281anti-parallel
Strand 3
B
284 293anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 411first strand
Strand 2
B
453 457anti-parallel
Strand 3
B
462 464anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 416first strand
Strand 2
B
448 450anti-parallel
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