Analysis of interatomic Contacts of Structural Units in PDB entry:
6SSP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SSP entry

There are 12 chains in PDB entry 6SSP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 9	VAL 314
B	ARG 10	LEU 315
C	ARG 10	LEU 315
D	ALA 9	ILE 317
E	ARG 10	ILE 317
F	ARG 10	CYS 313
G	ARG 10	ILE 317
H	ARG 10	ILE 317
I	ARG 10	VAL 316
J	ARG 10	ILE 317
K	GLN 1	SER 129
L	VAL 2	VAL 125

There are 97 helices in PDB entry 6SSP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	54	Right-handed 310
Helix 2	AA2	A	60	69	Right-handed alpha
Helix 3	AA3	A	154	158	Right-handed 310
Helix 4	AA4	A	201	208	Right-handed alpha
Helix 5	AA5	A	208	219	Right-handed alpha
Helix 6	AA6	A	220	223	Right-handed 310
Helix 7	AA7	A	227	251	Right-handed alpha
Helix 8	AA8	A	260	286	Right-handed alpha
Helix 9	AA9	A	294	299	Right-handed alpha
Helix 10	AB1	A	302	314	Right-handed alpha
Helix 11	AB2	B	50	54	Right-handed 310
Helix 12	AB3	B	60	69	Right-handed alpha
Helix 13	AB4	B	154	158	Right-handed 310
Helix 14	AB5	B	201	208	Right-handed alpha
Helix 15	AB6	B	208	220	Right-handed alpha
Helix 16	AB7	B	221	225	Right-handed 310
Helix 17	AB8	B	227	251	Right-handed alpha
Helix 18	AB9	B	260	286	Right-handed alpha
Helix 19	AC1	B	294	299	Right-handed alpha
Helix 20	AC2	B	302	315	Right-handed alpha
Helix 21	AC3	C	50	54	Right-handed 310
Helix 22	AC4	C	60	69	Right-handed alpha
Helix 23	AC5	C	201	208	Right-handed alpha
Helix 24	AC6	C	208	220	Right-handed alpha
Helix 25	AC7	C	221	225	Right-handed 310
Helix 26	AC8	C	227	251	Right-handed alpha
Helix 27	AC9	C	260	286	Right-handed alpha
Helix 28	AD1	C	294	299	Right-handed alpha
Helix 29	AD2	C	302	315	Right-handed alpha
Helix 30	AD3	D	60	69	Right-handed alpha
Helix 31	AD4	D	154	158	Right-handed 310
Helix 32	AD5	D	201	208	Right-handed alpha
Helix 33	AD6	D	208	220	Right-handed alpha
Helix 34	AD7	D	221	225	Right-handed 310
Helix 35	AD8	D	227	253	Right-handed alpha
Helix 36	AD9	D	260	286	Right-handed alpha
Helix 37	AE1	D	294	299	Right-handed alpha
Helix 38	AE2	D	302	317	Right-handed alpha
Helix 39	AE3	E	50	54	Right-handed 310
Helix 40	AE4	E	60	69	Right-handed alpha
Helix 41	AE5	E	201	208	Right-handed alpha
Helix 42	AE6	E	208	220	Right-handed alpha
Helix 43	AE7	E	221	225	Right-handed 310
Helix 44	AE8	E	227	251	Right-handed alpha
Helix 45	AE9	E	260	286	Right-handed alpha
Helix 46	AF1	E	294	299	Right-handed alpha
Helix 47	AF2	E	302	317	Right-handed alpha
Helix 48	AF3	F	50	54	Right-handed 310
Helix 49	AF4	F	60	69	Right-handed alpha
Helix 50	AF5	F	201	208	Right-handed alpha
Helix 51	AF6	F	208	220	Right-handed alpha
Helix 52	AF7	F	221	225	Right-handed 310
Helix 53	AF8	F	227	253	Right-handed alpha
Helix 54	AF9	F	260	286	Right-handed alpha
Helix 55	AG1	F	294	299	Right-handed alpha
Helix 56	AG2	F	302	313	Right-handed alpha
Helix 57	AG3	G	50	54	Right-handed 310
Helix 58	AG4	G	60	70	Right-handed alpha
Helix 59	AG5	G	201	208	Right-handed alpha
Helix 60	AG6	G	208	220	Right-handed alpha
Helix 61	AG7	G	221	225	Right-handed 310
Helix 62	AG8	G	227	253	Right-handed alpha
Helix 63	AG9	G	260	286	Right-handed alpha
Helix 64	AH1	G	294	299	Right-handed alpha
Helix 65	AH2	G	302	317	Right-handed alpha
Helix 66	AH3	H	60	69	Right-handed alpha
Helix 67	AH4	H	154	158	Right-handed 310
Helix 68	AH5	H	201	208	Right-handed alpha
Helix 69	AH6	H	208	220	Right-handed alpha
Helix 70	AH7	H	221	225	Right-handed 310
Helix 71	AH8	H	227	253	Right-handed alpha
Helix 72	AH9	H	260	286	Right-handed alpha
Helix 73	AI1	H	294	299	Right-handed alpha
Helix 74	AI2	H	302	317	Right-handed alpha
Helix 75	AI3	I	50	54	Right-handed 310
Helix 76	AI4	I	60	69	Right-handed alpha
Helix 77	AI5	I	201	208	Right-handed alpha
Helix 78	AI6	I	208	220	Right-handed alpha
Helix 79	AI7	I	221	225	Right-handed 310
Helix 80	AI8	I	227	253	Right-handed alpha
Helix 81	AI9	I	260	286	Right-handed alpha
Helix 82	AJ1	I	294	299	Right-handed alpha
Helix 83	AJ2	I	302	316	Right-handed alpha
Helix 84	AJ3	J	50	54	Right-handed 310
Helix 85	AJ4	J	60	69	Right-handed alpha
Helix 86	AJ5	J	201	208	Right-handed alpha
Helix 87	AJ6	J	208	220	Right-handed alpha
Helix 88	AJ7	J	221	225	Right-handed 310
Helix 89	AJ8	J	227	253	Right-handed alpha
Helix 90	AJ9	J	260	286	Right-handed alpha
Helix 91	AK1	J	294	299	Right-handed alpha
Helix 92	AK2	J	302	317	Right-handed alpha
Helix 93	AK3	K	87	91	Right-handed 310
Helix 94	AK4	K	103	111	Right-handed alpha
Helix 95	AK5	L	62	65	Right-handed 310
Helix 96	AK6	L	87	91	Right-handed 310
Helix 97	AK7	L	103	111	Right-handed alpha

There are 33 sheets in PDB entry 6SSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	86	94	anti-parallel
Strand 3	A	99	111	anti-parallel
Strand 4	A	32	44	anti-parallel
Strand 5	A	12	27	anti-parallel
Strand 6	A	140	149	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	160	162	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	167	174	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	86	94	anti-parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	32	44	anti-parallel
Strand 5	B	12	27	anti-parallel
Strand 6	B	140	148	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	187	199	anti-parallel
Strand 4	B	167	174	anti-parallel
Strand 5	I	167	174	parallel
Strand 6	I	187	199	anti-parallel
Strand 7	I	123	132	anti-parallel
Strand 8	I	76	78	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	162	first strand
Strand 2	B	187	199	anti-parallel
Strand 3	B	167	174	anti-parallel
Strand 4	I	167	174	parallel
Strand 5	I	187	199	anti-parallel
Strand 6	I	160	162	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	59	first strand
Strand 2	C	86	94	anti-parallel
Strand 3	C	99	111	anti-parallel
Strand 4	C	32	44	anti-parallel
Strand 5	C	12	27	anti-parallel
Strand 6	C	140	149	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	187	199	anti-parallel
Strand 4	C	160	162	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	187	199	anti-parallel
Strand 4	C	167	174	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	59	first strand
Strand 2	D	86	94	anti-parallel
Strand 3	D	99	111	anti-parallel
Strand 4	D	32	44	anti-parallel
Strand 5	D	12	27	anti-parallel
Strand 6	D	140	148	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	187	199	anti-parallel
Strand 4	D	160	162	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	187	199	anti-parallel
Strand 4	D	167	174	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	59	first strand
Strand 2	E	86	94	anti-parallel
Strand 3	E	99	111	anti-parallel
Strand 4	E	32	44	anti-parallel
Strand 5	E	12	27	anti-parallel
Strand 6	E	140	149	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	187	199	anti-parallel
Strand 4	E	160	162	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	187	199	anti-parallel
Strand 4	E	167	174	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	59	first strand
Strand 2	F	86	94	anti-parallel
Strand 3	F	99	111	anti-parallel
Strand 4	F	32	44	anti-parallel
Strand 5	F	12	27	anti-parallel
Strand 6	F	140	149	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	123	132	anti-parallel
Strand 3	F	191	199	anti-parallel
Strand 4	F	160	162	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	123	132	anti-parallel
Strand 3	F	191	199	anti-parallel
Strand 4	F	167	170	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	59	first strand
Strand 2	G	86	94	anti-parallel
Strand 3	G	99	111	anti-parallel
Strand 4	G	32	44	anti-parallel
Strand 5	G	12	27	anti-parallel
Strand 6	G	140	149	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	78	first strand
Strand 2	G	123	132	anti-parallel
Strand 3	G	187	199	anti-parallel
Strand 4	G	160	174	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	59	first strand
Strand 2	H	86	94	anti-parallel
Strand 3	H	99	111	anti-parallel
Strand 4	H	32	44	anti-parallel
Strand 5	H	12	27	anti-parallel
Strand 6	H	140	149	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	78	first strand
Strand 2	H	123	132	anti-parallel
Strand 3	H	187	199	anti-parallel
Strand 4	H	160	162	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	78	first strand
Strand 2	H	123	132	anti-parallel
Strand 3	H	187	199	anti-parallel
Strand 4	H	167	174	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	59	first strand
Strand 2	I	86	94	anti-parallel
Strand 3	I	99	111	anti-parallel
Strand 4	I	32	44	anti-parallel
Strand 5	I	12	27	anti-parallel
Strand 6	I	140	149	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	59	first strand
Strand 2	J	86	94	anti-parallel
Strand 3	J	99	111	anti-parallel
Strand 4	J	32	44	anti-parallel
Strand 5	J	12	27	anti-parallel
Strand 6	J	140	148	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	78	first strand
Strand 2	J	123	132	anti-parallel
Strand 3	J	187	199	anti-parallel
Strand 4	J	160	162	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	78	first strand
Strand 2	J	123	132	anti-parallel
Strand 3	J	187	199	anti-parallel
Strand 4	J	167	174	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	13	first strand
Strand 2	K	123	128	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	33	39	anti-parallel
Strand 5	K	46	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	13	first strand
Strand 2	K	123	128	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	118	119	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	7	first strand
Strand 2	L	18	25	anti-parallel
Strand 3	L	78	83	anti-parallel
Strand 4	L	68	73	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	58	60	first strand
Strand 2	L	46	51	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	96	99	anti-parallel
Strand 5	L	118	119	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	92	94	first strand
Strand 2	L	123	125	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SSP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SSP