Analysis of interatomic Contacts of Structural Units in PDB entry:
6SSQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SSQ entry

There are 4 chains in PDB entry 6SSQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 170GLU 408
B
 GLY 160GLU 408
F
 HIS 630GLU 639
G
 ARG 629GLU 639
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6SSQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
171 190Right-handed alpha
Helix 2
AA2
A
194 198Right-handed 310
Helix 3
AA3
A
214 238Right-handed alpha
Helix 4
AA4
A
241 245Right-handed 310
Helix 5
AA5
A
246 268Right-handed alpha
Helix 6
AA6
A
287 293Right-handed alpha
Helix 7
AA7
A
295 297Right-handed 310
Helix 8
AA8
A
298 310Right-handed alpha
Helix 9
AA9
A
311 313Right-handed 310
Helix 10
AB1
A
315 328Right-handed alpha
Helix 11
AB2
A
337 360Right-handed alpha
Helix 12
AB3
A
365 372Right-handed alpha
Helix 13
AB4
A
372 395Right-handed alpha
Helix 14
AB5
A
400 407Right-handed alpha
Helix 15
AB6
B
174 191Right-handed alpha
Helix 16
AB7
B
194 198Right-handed 310
Helix 17
AB8
B
214 239Right-handed alpha
Helix 18
AB9
B
241 245Right-handed 310
Helix 19
AC1
B
246 268Right-handed alpha
Helix 20
AC2
B
287 294Right-handed alpha
Helix 21
AC3
B
295 297Right-handed 310
Helix 22
AC4
B
298 310Right-handed alpha
Helix 23
AC5
B
311 313Right-handed 310
Helix 24
AC6
B
315 328Right-handed alpha
Helix 25
AC7
B
337 360Right-handed alpha
Helix 26
AC8
B
365 395Right-handed alpha
Helix 27
AC9
B
400 408Right-handed alpha
Helix 28
AD1
F
631 639Right-handed alpha
Helix 29
AD2
G
631 639Right-handed alpha
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There are 2 sheets in PDB entry 6SSQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
276 278anti-parallel
Strand 3
A
284 286anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 271first strand
Strand 2
B
276 278anti-parallel
Strand 3
B
284 286anti-parallel
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