Analysis of interatomic Contacts of Structural Units in PDB entry:
6SSV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SSV entry

There is 1 chain in PDB entry 6SSV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 21ILE 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6SSV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 32Right-handed alpha
Helix 2
AA2
A
42 57Right-handed alpha
Helix 3
AA3
A
60 71Right-handed alpha
Helix 4
AA4
A
73 79Right-handed alpha
Helix 5
AA5
A
81 103Right-handed alpha
Helix 6
AA6
A
130 140Right-handed alpha
Helix 7
AA7
A
152 168Right-handed alpha
Helix 8
AA8
A
203 205Right-handed 310
Helix 9
AA9
A
266 274Right-handed alpha
Helix 10
AB1
A
278 284Right-handed alpha
Helix 11
AB2
A
308 313Right-handed alpha
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There are 5 sheets in PDB entry 6SSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
393 399anti-parallel
Strand 3
A
381 387anti-parallel
Strand 4
A
253 260anti-parallel
Strand 5
A
241 247anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
112 113anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
115 124parallel
Strand 3
A
186 194anti-parallel
Strand 4
A
337 343parallel
Strand 5
A
304 305anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
352 353anti-parallel
Strand 3
A
345 349anti-parallel
Strand 4
A
298 301anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 213first strand
Strand 2
A
219 233anti-parallel
Strand 3
A
287 296anti-parallel
Strand 4
A
373 376parallel
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