Analysis of interatomic Contacts of Structural Units in PDB entry:
6STF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6STF entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 10 chains in PDB entry 6STF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 5ALA 110
A
 ALA 112HIS 178
B
 MET 5ALA 110
B
 ALA 112HIS 177
C
 ASP 6ALA 110
C
 ALA 112LYS 176
D
 TYR 7ALA 110
D
 ALA 112LYS 175
E
 ASP 6ALA 110
E
 ALA 112HIS 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6STF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 31Right-handed alpha
Helix 2
AA2
A
67 71Right-handed 310
Helix 3
AA3
A
74 79Right-handed 310
Helix 4
AA4
A
92 98Right-handed alpha
Helix 5
AA5
A
98 110Right-handed alpha
Helix 6
AA6
A
132 143Right-handed alpha
Helix 7
AA7
A
157 178Right-handed alpha
Helix 8
AA8
B
20 31Right-handed alpha
Helix 9
AA9
B
74 79Right-handed 310
Helix 10
AB1
B
92 98Right-handed alpha
Helix 11
AB2
B
98 110Right-handed alpha
Helix 12
AB3
B
125 129Right-handed 310
Helix 13
AB4
B
132 143Right-handed alpha
Helix 14
AB5
B
157 177Right-handed alpha
Helix 15
AB6
C
20 31Right-handed alpha
Helix 16
AB7
C
92 98Right-handed alpha
Helix 17
AB8
C
98 110Right-handed alpha
Helix 18
AB9
C
125 129Right-handed 310
Helix 19
AC1
C
132 143Right-handed alpha
Helix 20
AC2
C
157 176Right-handed alpha
Helix 21
AC3
D
20 31Right-handed alpha
Helix 22
AC4
D
92 98Right-handed alpha
Helix 23
AC5
D
98 109Right-handed alpha
Helix 24
AC6
D
125 129Right-handed 310
Helix 25
AC7
D
132 143Right-handed alpha
Helix 26
AC8
D
157 175Right-handed alpha
Helix 27
AC9
E
20 31Right-handed alpha
Helix 28
AD1
E
92 98Right-handed alpha
Helix 29
AD2
E
98 110Right-handed alpha
Helix 30
AD3
E
125 129Right-handed 310
Helix 31
AD4
E
132 143Right-handed alpha
Helix 32
AD5
E
157 177Right-handed alpha
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There are 5 sheets in PDB entry 6STF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 52first strand
Strand 2
A
55 62anti-parallel
Strand 3
A
7 14parallel
Strand 4
A
83 89parallel
Strand 5
A
115 121parallel
Strand 6
A
146 149parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 52first strand
Strand 2
B
55 62anti-parallel
Strand 3
B
7 14parallel
Strand 4
B
83 89parallel
Strand 5
B
115 121parallel
Strand 6
B
146 149parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 52first strand
Strand 2
C
55 62anti-parallel
Strand 3
C
7 14parallel
Strand 4
C
81 89parallel
Strand 5
C
115 121parallel
Strand 6
C
146 149parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 52first strand
Strand 2
D
55 63anti-parallel
Strand 3
D
8 14parallel
Strand 4
D
83 89parallel
Strand 5
D
115 121parallel
Strand 6
D
146 149parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
45 52first strand
Strand 2
E
55 63anti-parallel
Strand 3
E
7 14parallel
Strand 4
E
81 89parallel
Strand 5
E
115 121parallel
Strand 6
E
146 149parallel
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