Analysis of interatomic Contacts of Structural Units in PDB entry:
6STJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6STJ entry

There are 8 chains in PDB entry 6STJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 172GLU 322
B
 SER 172GLU 322
C
 ARG 176HIS 320
D
 SER 172HIS 320
E
 ASN 3VAL 91
F
 GLU 2VAL 91
G
 SER 4VAL 91
H
 SER 4VAL 91
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6STJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
172 192Right-handed alpha
Helix 2
AA2
A
205 224Right-handed alpha
Helix 3
AA3
A
224 233Right-handed alpha
Helix 4
AA4
A
239 252Right-handed alpha
Helix 5
AA5
A
253 257Right-handed 310
Helix 6
AA6
A
260 281Right-handed alpha
Helix 7
AA7
A
283 285Right-handed 310
Helix 8
AA8
A
286 309Right-handed alpha
Helix 9
AA9
A
311 319Right-handed alpha
Helix 10
AB1
B
173 192Right-handed alpha
Helix 11
AB2
B
205 233Right-handed alpha
Helix 12
AB3
B
239 252Right-handed alpha
Helix 13
AB4
B
253 257Right-handed 310
Helix 14
AB5
B
260 281Right-handed alpha
Helix 15
AB6
B
283 285Right-handed 310
Helix 16
AB7
B
286 309Right-handed alpha
Helix 17
AB8
B
311 319Right-handed alpha
Helix 18
AB9
C
177 191Right-handed alpha
Helix 19
AC1
C
210 223Right-handed alpha
Helix 20
AC2
C
224 231Right-handed alpha
Helix 21
AC3
C
260 281Right-handed alpha
Helix 22
AC4
C
283 285Right-handed 310
Helix 23
AC5
C
286 302Right-handed alpha
Helix 24
AC6
C
302 307Right-handed alpha
Helix 25
AC7
C
311 319Right-handed alpha
Helix 26
AC8
D
173 192Right-handed alpha
Helix 27
AC9
D
206 224Right-handed alpha
Helix 28
AD1
D
224 234Right-handed alpha
Helix 29
AD2
D
239 254Right-handed alpha
Helix 30
AD3
D
260 281Right-handed alpha
Helix 31
AD4
D
283 285Right-handed 310
Helix 32
AD5
D
286 302Right-handed alpha
Helix 33
AD6
D
302 310Right-handed alpha
Helix 34
AD7
D
311 319Right-handed alpha
Helix 35
AD8
E
4 22Right-handed alpha
Helix 36
AD9
F
3 22Right-handed alpha
Helix 37
AE1
G
5 22Right-handed alpha
Helix 38
AE2
G
41 44Right-handed 310
Helix 39
AE3
H
5 22Right-handed alpha
Helix 40
AE4
H
41 44Right-handed 310
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There are 4 sheets in PDB entry 6STJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
27 38first strand
Strand 2
E
46 56anti-parallel
Strand 3
E
61 74anti-parallel
Strand 4
E
79 90anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
27 38first strand
Strand 2
F
46 56anti-parallel
Strand 3
F
61 74anti-parallel
Strand 4
F
79 90anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
27 38first strand
Strand 2
G
46 57anti-parallel
Strand 3
G
60 74anti-parallel
Strand 4
G
79 90anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
27 38first strand
Strand 2
H
46 57anti-parallel
Strand 3
H
60 74anti-parallel
Strand 4
H
79 90anti-parallel
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