Analysis of interatomic Contacts of Structural Units in PDB entry:
6STW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6STW entry

There are 3 chains in PDB entry 6STW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 178GLU 367
B
 ASP 178GLU 367
C
 LYS 179GLU 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 6STW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
224 228Right-handed 310
Helix 2
AA2
A
236 239Right-handed 310
Helix 3
AA3
A
281 285Right-handed 310
Helix 4
AA4
A
316 318Right-handed 310
Helix 5
AA5
B
224 228Right-handed 310
Helix 6
AA6
B
236 239Right-handed 310
Helix 7
AA7
B
281 285Right-handed 310
Helix 8
AA8
B
316 318Right-handed 310
Helix 9
AA9
C
224 228Right-handed 310
Helix 10
AB1
C
236 239Right-handed 310
Helix 11
AB2
C
278 283Right-handed alpha
Helix 12
AB3
C
316 318Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 6STW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
181 183anti-parallel
Strand 3
A
200 209anti-parallel
Strand 4
A
212 221anti-parallel
Strand 5
A
359 364anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
350 352anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 248first strand
Strand 2
A
337 344anti-parallel
Strand 3
A
322 329anti-parallel
Strand 4
A
308 314anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
181 183anti-parallel
Strand 3
B
200 209anti-parallel
Strand 4
B
212 221anti-parallel
Strand 5
B
359 364anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 230first strand
Strand 2
B
350 352anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 248first strand
Strand 2
B
337 344anti-parallel
Strand 3
B
322 329anti-parallel
Strand 4
B
308 314anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
266 267first strand
Strand 2
C
181 183anti-parallel
Strand 3
C
200 209anti-parallel
Strand 4
C
212 221anti-parallel
Strand 5
C
359 364anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 230first strand
Strand 2
C
350 352anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
241 248first strand
Strand 2
C
337 344anti-parallel
Strand 3
C
322 329anti-parallel
Strand 4
C
308 314anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il