Analysis of interatomic Contacts of Structural Units in PDB entry:
6SU8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SU8 entry

There are 3 chains in PDB entry 6SU8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 2	GLN 396
B	GLN 2	GLN 396
C	GLN 2	GLN 396

There are 29 helices in PDB entry 6SU8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	38	Right-handed 310
Helix 2	AA2	A	63	70	Right-handed alpha
Helix 3	AA3	A	165	170	Right-handed 310
Helix 4	AA4	A	226	231	Right-handed 310
Helix 5	AA5	A	309	317	Right-handed alpha
Helix 6	AA6	A	324	336	Right-handed alpha
Helix 7	AA7	A	351	356	Right-handed alpha
Helix 8	AA8	A	357	360	Right-handed 310
Helix 9	AA9	A	368	376	Right-handed alpha
Helix 10	AB1	B	35	38	Right-handed 310
Helix 11	AB2	B	63	70	Right-handed alpha
Helix 12	AB3	B	78	81	Right-handed 310
Helix 13	AB4	B	165	170	Right-handed 310
Helix 14	AB5	B	226	231	Right-handed 310
Helix 15	AB6	B	309	317	Right-handed alpha
Helix 16	AB7	B	324	336	Right-handed alpha
Helix 17	AB8	B	351	356	Right-handed alpha
Helix 18	AB9	B	357	360	Right-handed 310
Helix 19	AC1	B	368	376	Right-handed alpha
Helix 20	AC2	C	35	38	Right-handed 310
Helix 21	AC3	C	63	70	Right-handed alpha
Helix 22	AC4	C	78	81	Right-handed 310
Helix 23	AC5	C	165	170	Right-handed 310
Helix 24	AC6	C	226	231	Right-handed 310
Helix 25	AC7	C	309	317	Right-handed alpha
Helix 26	AC8	C	324	336	Right-handed alpha
Helix 27	AC9	C	351	356	Right-handed alpha
Helix 28	AD1	C	357	360	Right-handed 310
Helix 29	AD2	C	368	376	Right-handed alpha

There are 29 sheets in PDB entry 6SU8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	71	73	parallel
Strand 3	A	40	42	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	27	first strand
Strand 2	A	15	19	anti-parallel
Strand 3	A	380	389	parallel
Strand 4	A	89	93	anti-parallel
Strand 5	A	83	86	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	27	first strand
Strand 2	A	15	19	anti-parallel
Strand 3	A	380	389	parallel
Strand 4	A	130	136	anti-parallel
Strand 5	A	266	274	anti-parallel
Strand 6	A	283	292	anti-parallel
Strand 7	A	295	297	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	108	112	anti-parallel
Strand 3	A	338	344	anti-parallel
Strand 4	A	145	151	anti-parallel
Strand 5	A	199	205	anti-parallel
Strand 6	A	210	215	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	55	56	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	97	first strand
Strand 2	A	102	104	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	194	196	anti-parallel
Strand 3	A	223	225	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	184	first strand
Strand 2	A	187	188	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	255	first strand
Strand 2	A	260	261	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	71	73	parallel
Strand 3	B	40	42	anti-parallel
Strand 4	B	45	49	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	27	first strand
Strand 2	B	15	19	anti-parallel
Strand 3	B	380	389	parallel
Strand 4	B	89	93	anti-parallel
Strand 5	B	83	86	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	27	first strand
Strand 2	B	15	19	anti-parallel
Strand 3	B	380	389	parallel
Strand 4	B	130	136	anti-parallel
Strand 5	B	266	274	anti-parallel
Strand 6	B	283	292	anti-parallel
Strand 7	B	295	297	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	108	112	anti-parallel
Strand 3	B	337	344	anti-parallel
Strand 4	B	123	124	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	108	112	anti-parallel
Strand 3	B	337	344	anti-parallel
Strand 4	B	145	151	anti-parallel
Strand 5	B	199	205	anti-parallel
Strand 6	B	210	215	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	52	first strand
Strand 2	B	55	56	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	98	first strand
Strand 2	B	101	104	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	B	194	196	anti-parallel
Strand 3	B	223	225	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	184	first strand
Strand 2	B	187	188	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	255	first strand
Strand 2	B	260	261	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	C	71	73	parallel
Strand 3	C	40	42	anti-parallel
Strand 4	C	45	49	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	27	first strand
Strand 2	C	15	19	anti-parallel
Strand 3	C	380	389	parallel
Strand 4	C	89	93	anti-parallel
Strand 5	C	83	86	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	27	first strand
Strand 2	C	15	19	anti-parallel
Strand 3	C	380	389	parallel
Strand 4	C	130	136	anti-parallel
Strand 5	C	266	274	anti-parallel
Strand 6	C	283	292	anti-parallel
Strand 7	C	295	297	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	33	first strand
Strand 2	C	108	112	anti-parallel
Strand 3	C	337	344	anti-parallel
Strand 4	C	123	124	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	33	first strand
Strand 2	C	108	112	anti-parallel
Strand 3	C	337	344	anti-parallel
Strand 4	C	145	151	anti-parallel
Strand 5	C	199	205	anti-parallel
Strand 6	C	210	215	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	55	56	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	101	104	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	194	196	anti-parallel
Strand 3	C	223	225	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	184	first strand
Strand 2	C	187	188	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	255	first strand
Strand 2	C	260	261	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SU8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SU8