Analysis of interatomic Contacts of Structural Units in PDB entry:
6SUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SUB entry

There is 1 chain in PDB entry 6SUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 872LEU 1146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6SUB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
878 901Right-handed alpha
Helix 2
AA2
A
965 967Right-handed 310
Helix 3
AA3
A
968 979Right-handed alpha
Helix 4
AA4
A
1060 1074Right-handed alpha
Helix 5
AA5
A
1090 1109Right-handed alpha
Helix 6
AA6
A
1112 1124Right-handed alpha
Helix 7
AA7
A
1130 1145Right-handed alpha
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There are 3 sheets in PDB entry 6SUB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
874 875first strand
Strand 2
A
1110 1111anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
946 949first strand
Strand 2
A
958 961anti-parallel
Strand 3
A
1081 1084parallel
Strand 4
A
983 986parallel
Strand 5
A
1041 1048parallel
Strand 6
A
1025 1034anti-parallel
Strand 7
A
1012 1021anti-parallel
Strand 8
A
1006 1009anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
991 992first strand
Strand 2
A
995 996anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il