Analysis of interatomic Contacts of Structural Units in PDB entry:
6SUI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SUI entry

There is 1 chain in PDB entry 6SUI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6SUI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
10 23Right-handed alpha
Helix 3
AA3
A
25 27Right-handed 310
Helix 4
AA4
A
60 77Right-handed alpha
Helix 5
AA5
A
118 122Right-handed 310
Helix 6
AA6
A
123 142Right-handed alpha
Helix 7
AA7
A
148 152Right-handed 310
Helix 8
AA8
A
155 162Right-handed 310
Helix 9
AA9
A
163 168Right-handed alpha
Helix 10
AB1
A
172 187Right-handed alpha
Helix 11
AB2
A
204 206Right-handed 310
Helix 12
AB3
A
228 242Right-handed alpha
Helix 13
AB4
A
249 266Right-handed alpha
Helix 14
AB5
A
272 277Right-handed 310
Helix 15
AB6
A
278 298Right-handed alpha
Helix 16
AB7
A
299 303Right-handed 310
Helix 17
AB8
A
304 320Right-handed alpha
Helix 18
AB9
A
328 333Right-handed 310
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There are 4 sheets in PDB entry 6SUI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
38 44anti-parallel
Strand 3
A
47 55anti-parallel
Strand 4
A
103 110anti-parallel
Strand 5
A
84 85anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
38 44anti-parallel
Strand 3
A
47 55anti-parallel
Strand 4
A
103 110anti-parallel
Strand 5
A
94 97anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 199first strand
Strand 2
A
224 227anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
214 217anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il