Analysis of interatomic Contacts of Structural Units in PDB entry:
6SUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SUP entry

There is 1 chain in PDB entry 6SUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 32GLU 1287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 6SUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
171 173Right-handed 310
Helix 2
2
A
214 219Right-handed alpha
Helix 3
3
A
253 255Right-handed 310
Helix 4
4
A
314 317Right-handed alpha
Helix 5
5
A
375 378Right-handed alpha
Helix 6
6
A
385 387Right-handed 310
Helix 7
7
A
456 458Right-handed 310
Helix 8
8
A
489 491Right-handed 310
Helix 9
9
A
494 498Right-handed 310
Helix 10
10
A
501 506Right-handed alpha
Helix 11
11
A
607 609Right-handed 310
Helix 12
12
A
717 730Right-handed alpha
Helix 13
13
A
815 824Right-handed alpha
Helix 14
14
A
855 865Right-handed alpha
Helix 15
15
A
971 975Right-handed alpha
Helix 16
16
A
978 980Right-handed 310
Helix 17
17
A
1018 1020Right-handed 310
Helix 18
18
A
1028 1032Right-handed alpha
Helix 19
19
A
1084 1088Right-handed 310
Helix 20
20
A
1094 1103Right-handed alpha
Helix 21
21
A
1134 1136Right-handed 310
Helix 22
22
A
1236 1240Right-handed alpha
Helix 23
23
A
1265 1272Right-handed alpha
Helix 24
24
A
1275 1280Right-handed alpha
Helix 25
25
A
1293 1300Right-handed alpha
Helix 26
26
A
1307 1312Right-handed alpha
Helix 27
27
A
1415 1420Right-handed alpha
Helix 28
28
A
1466 1468Right-handed 310
Helix 29
29
A
1485 1487Right-handed 310
Helix 30
30
A
1539 1547Right-handed alpha
Helix 31
31
A
1636 1641Right-handed alpha
Helix 32
32
A
1689 1695Right-handed alpha
Helix 33
33
A
1923 1925Right-handed 310
Helix 34
34
A
1927 1929Right-handed 310
Helix 35
35
A
2091 2096Right-handed alpha
Helix 36
36
A
2101 2103Right-handed 310
Helix 37
37
A
2133 2136Right-handed 310
Helix 38
38
A
2144 2146Right-handed 310
Helix 39
39
A
2331 2338Right-handed alpha
Back to top of page

There are 26 sheets in PDB entry 6SUP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
56 60anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
184 188anti-parallel
Strand 3
A
174 176anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
125 132anti-parallel
Strand 3
A
140 146anti-parallel
Strand 4
A
154 158anti-parallel
Strand 5
A
164 167anti-parallel
Strand 6
A
189 193anti-parallel
Strand 7
A
199 206anti-parallel
Strand 8
A
227 234anti-parallel
Strand 9
A
258 263anti-parallel
Strand 10
A
307 312anti-parallel
Strand 11
A
328 338anti-parallel
Strand 12
A
345 354anti-parallel
Strand 13
A
360 362anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
125 127anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
299 301anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 399first strand
Strand 2
A
408 413anti-parallel
Strand 3
A
416 420anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 424first strand
Strand 2
A
433 435anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
464 467anti-parallel
Strand 3
A
485 488anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 541first strand
Strand 2
A
544 547anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 559first strand
Strand 2
A
570 573anti-parallel
Strand 3
A
578 581anti-parallel
Strand 4
A
592 594anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
610 613first strand
Strand 2
A
622 626anti-parallel
Strand 3
A
630 634anti-parallel
Strand 4
A
646 649anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
661 665first strand
Strand 2
A
674 678anti-parallel
Strand 3
A
686 689anti-parallel
Back to list of sheets
Back to top of page

There are 18 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 370first strand
Strand 2
A
699 703anti-parallel
Strand 3
A
708 716anti-parallel
Strand 4
A
744 753anti-parallel
Strand 5
A
759 767anti-parallel
Strand 6
A
783 791anti-parallel
Strand 7
A
804 810anti-parallel
Strand 8
A
869 876anti-parallel
Strand 9
A
888 898anti-parallel
Strand 10
A
909 920anti-parallel
Strand 11
A
929 937anti-parallel
Strand 12
A
946 951anti-parallel
Strand 13
A
982 990anti-parallel
Strand 14
A
1008 1017anti-parallel
Strand 15
A
1045 1055anti-parallel
Strand 16
A
1071 1080anti-parallel
Strand 17
A
1120 1126anti-parallel
Strand 18
A
1107 1110anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 898first strand
Strand 2
A
838 843parallel
Strand 3
A
846 849anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
995 997first strand
Strand 2
A
1000 1002anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1153 1156first strand
Strand 2
A
1163 1167anti-parallel
Strand 3
A
1173 1179anti-parallel
Strand 4
A
1184 1189anti-parallel
Strand 5
A
1195 1200anti-parallel
Strand 6
A
1206 1215anti-parallel
Strand 7
A
1218 1221anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1250 1255first strand
Strand 2
A
1322 1328anti-parallel
Strand 3
A
1339 1346anti-parallel
Strand 4
A
1352 1358anti-parallel
Strand 5
A
1384 1387anti-parallel
Strand 6
A
1405 1407anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1362 1364first strand
Strand 2
A
1378 1380anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1390 1392first strand
Strand 2
A
1398 1402anti-parallel
Strand 3
A
1426 1431anti-parallel
Strand 4
A
1437 1441anti-parallel
Strand 5
A
1447 1452anti-parallel
Strand 6
A
1456 1460anti-parallel
Strand 7
A
1493 1497anti-parallel
Strand 8
A
1503 1510anti-parallel
Strand 9
A
1519 1527anti-parallel
Strand 10
A
1533 1537anti-parallel
Back to list of sheets
Back to top of page

There are 20 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1555 1559first strand
Strand 2
A
1565 1570anti-parallel
Strand 3
A
1574 1580anti-parallel
Strand 4
A
1586 1590anti-parallel
Strand 5
A
1596 1601anti-parallel
Strand 6
A
1610 1616anti-parallel
Strand 7
A
1624 1631anti-parallel
Strand 8
A
1647 1651anti-parallel
Strand 9
A
1655 1661anti-parallel
Strand 10
A
1670 1675anti-parallel
Strand 11
A
1701 1707anti-parallel
Strand 12
A
1713 1717anti-parallel
Strand 13
A
1723 1728anti-parallel
Strand 14
A
1734 1740anti-parallel
Strand 15
A
1747 1754anti-parallel
Strand 16
A
1763 1766anti-parallel
Strand 17
A
1770 1776anti-parallel
Strand 18
A
1783 1790anti-parallel
Strand 19
A
1795 1804anti-parallel
Strand 20
A
1810 1815anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1834 1836first strand
Strand 2
A
1842 1850anti-parallel
Strand 3
A
1872 1881anti-parallel
Strand 4
A
1887 1893anti-parallel
Strand 5
A
1900 1904anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1905 1907first strand
Strand 2
A
1914 1916anti-parallel
Back to list of sheets
Back to top of page

There are 12 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2083 2088first strand
Strand 2
A
2071 2077anti-parallel
Strand 3
A
2061 2065anti-parallel
Strand 4
A
2049 2055anti-parallel
Strand 5
A
2032 2039anti-parallel
Strand 6
A
2017 2024anti-parallel
Strand 7
A
2004 2011anti-parallel
Strand 8
A
1994 2001anti-parallel
Strand 9
A
1980 1987anti-parallel
Strand 10
A
1968 1974anti-parallel
Strand 11
A
1953 1959anti-parallel
Strand 12
A
1945 1947anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 518first strand
Strand 2
A
521 524anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
769 772first strand
Strand 2
A
777 781anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1128 1131first strand
Strand 2
A
1140 1144anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il