Analysis of interatomic Contacts of Structural Units in PDB entry:
6SW4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SW4 entry

There are 2 chains in PDB entry 6SW4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 45ALA 334
B
 ILE 38ALA 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6SW4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 76Right-handed alpha
Helix 2
AA2
A
88 102Right-handed alpha
Helix 3
AA3
A
117 127Right-handed alpha
Helix 4
AA4
A
150 167Right-handed alpha
Helix 5
AA5
A
180 198Right-handed alpha
Helix 6
AA6
A
212 227Right-handed alpha
Helix 7
AA7
A
237 252Right-handed alpha
Helix 8
AA8
A
264 273Right-handed alpha
Helix 9
AA9
A
283 300Right-handed alpha
Helix 10
AB1
A
328 333Right-handed 310
Helix 11
AB2
B
59 76Right-handed alpha
Helix 12
AB3
B
88 101Right-handed alpha
Helix 13
AB4
B
117 127Right-handed alpha
Helix 14
AB5
B
150 166Right-handed alpha
Helix 15
AB6
B
180 198Right-handed alpha
Helix 16
AB7
B
212 227Right-handed alpha
Helix 17
AB8
B
237 252Right-handed alpha
Helix 18
AB9
B
264 274Right-handed alpha
Helix 19
AC1
B
283 300Right-handed alpha
Helix 20
AC2
B
328 333Right-handed 310
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There are 3 sheets in PDB entry 6SW4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 84first strand
Strand 2
A
48 54parallel
Strand 3
A
106 109parallel
Strand 4
A
131 134parallel
Strand 5
A
146 148parallel
Strand 6
A
316 318parallel
Strand 7
B
316 318anti-parallel
Strand 8
B
146 148parallel
Strand 9
B
131 134parallel
Strand 10
B
106 109parallel
Strand 11
B
48 53parallel
Strand 12
B
78 83parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 208first strand
Strand 2
A
170 176parallel
Strand 3
A
230 235parallel
Strand 4
A
257 261parallel
Strand 5
A
278 282parallel
Strand 6
A
321 324anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 208first strand
Strand 2
B
170 176parallel
Strand 3
B
232 235parallel
Strand 4
B
257 261parallel
Strand 5
B
278 282parallel
Strand 6
B
321 324anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il