Analysis of interatomic Contacts of Structural Units in PDB entry:
6SW5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SW5 entry

There are 4 chains in PDB entry 6SW5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 16	PHE 395
B	GLY 16	PHE 395
C	GLY 16	PHE 395
D	GLY 16	PHE 395

There are 46 helices in PDB entry 6SW5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	49	Right-handed alpha
Helix 2	AA2	A	78	91	Right-handed alpha
Helix 3	AA3	A	151	170	Right-handed alpha
Helix 4	AA4	A	214	226	Right-handed alpha
Helix 5	AA5	A	226	231	Right-handed alpha
Helix 6	AA6	A	232	236	Right-handed 310
Helix 7	AA7	A	289	308	Right-handed alpha
Helix 8	AA8	A	341	353	Right-handed alpha
Helix 9	AA9	A	356	364	Right-handed alpha
Helix 10	AB1	A	370	375	Right-handed alpha
Helix 11	AB2	A	385	389	Right-handed 310
Helix 12	AB3	B	29	49	Right-handed alpha
Helix 13	AB4	B	78	91	Right-handed alpha
Helix 14	AB5	B	95	98	Right-handed 310
Helix 15	AB6	B	151	170	Right-handed alpha
Helix 16	AB7	B	214	225	Right-handed alpha
Helix 17	AB8	B	226	231	Right-handed alpha
Helix 18	AB9	B	232	236	Right-handed 310
Helix 19	AC1	B	289	308	Right-handed alpha
Helix 20	AC2	B	341	353	Right-handed alpha
Helix 21	AC3	B	356	364	Right-handed alpha
Helix 22	AC4	B	370	375	Right-handed alpha
Helix 23	AC5	B	385	389	Right-handed 310
Helix 24	AC6	C	29	49	Right-handed alpha
Helix 25	AC7	C	78	91	Right-handed alpha
Helix 26	AC8	C	95	98	Right-handed 310
Helix 27	AC9	C	151	171	Right-handed alpha
Helix 28	AD1	C	214	226	Right-handed alpha
Helix 29	AD2	C	226	231	Right-handed alpha
Helix 30	AD3	C	232	236	Right-handed 310
Helix 31	AD4	C	289	308	Right-handed alpha
Helix 32	AD5	C	341	353	Right-handed alpha
Helix 33	AD6	C	356	365	Right-handed alpha
Helix 34	AD7	C	370	375	Right-handed alpha
Helix 35	AD8	C	385	389	Right-handed 310
Helix 36	AD9	D	29	47	Right-handed alpha
Helix 37	AE1	D	78	91	Right-handed alpha
Helix 38	AE2	D	151	171	Right-handed alpha
Helix 39	AE3	D	214	226	Right-handed alpha
Helix 40	AE4	D	226	231	Right-handed alpha
Helix 41	AE5	D	232	236	Right-handed 310
Helix 42	AE6	D	289	308	Right-handed alpha
Helix 43	AE7	D	341	353	Right-handed alpha
Helix 44	AE8	D	356	364	Right-handed alpha
Helix 45	AE9	D	371	375	Right-handed 310
Helix 46	AF1	D	385	389	Right-handed 310

There are 18 sheets in PDB entry 6SW5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	25	first strand
Strand 2	A	176	191	anti-parallel
Strand 3	A	194	209	anti-parallel
Strand 4	A	241	244	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	108	first strand
Strand 2	A	64	72	parallel
Strand 3	A	111	113	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	108	first strand
Strand 2	A	64	72	parallel
Strand 3	A	53	60	anti-parallel
Strand 4	A	260	261	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	143	first strand
Strand 2	A	313	319	anti-parallel
Strand 3	A	329	333	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	25	first strand
Strand 2	B	176	191	anti-parallel
Strand 3	B	194	209	anti-parallel
Strand 4	B	241	244	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	108	first strand
Strand 2	B	64	72	parallel
Strand 3	B	111	113	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	108	first strand
Strand 2	B	64	72	parallel
Strand 3	B	53	61	anti-parallel
Strand 4	B	260	261	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	99	100	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	143	first strand
Strand 2	B	313	319	anti-parallel
Strand 3	B	329	333	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	25	first strand
Strand 2	C	176	191	anti-parallel
Strand 3	C	194	209	anti-parallel
Strand 4	C	241	244	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	108	first strand
Strand 2	C	64	72	parallel
Strand 3	C	111	113	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	108	first strand
Strand 2	C	64	72	parallel
Strand 3	C	53	60	anti-parallel
Strand 4	C	260	261	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	99	100	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	143	first strand
Strand 2	C	313	319	anti-parallel
Strand 3	C	329	333	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	25	first strand
Strand 2	D	176	191	anti-parallel
Strand 3	D	194	209	anti-parallel
Strand 4	D	241	244	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	61	first strand
Strand 2	D	64	72	anti-parallel
Strand 3	D	105	108	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	61	first strand
Strand 2	D	64	72	anti-parallel
Strand 3	D	111	113	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	143	first strand
Strand 2	D	313	319	anti-parallel
Strand 3	D	329	333	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SW5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SW5