Analysis of interatomic Contacts of Structural Units in PDB entry:
6SW6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SW6 entry

There are 2 chains in PDB entry 6SW6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 14PHE 395
B
 GLY 16PHE 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6SW6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 47Right-handed alpha
Helix 2
AA2
A
78 91Right-handed alpha
Helix 3
AA3
A
94 98Right-handed 310
Helix 4
AA4
A
151 170Right-handed alpha
Helix 5
AA5
A
214 226Right-handed alpha
Helix 6
AA6
A
226 231Right-handed alpha
Helix 7
AA7
A
232 236Right-handed 310
Helix 8
AA8
A
253 257Right-handed 310
Helix 9
AA9
A
265 270Right-handed alpha
Helix 10
AB1
A
289 308Right-handed alpha
Helix 11
AB2
A
341 353Right-handed alpha
Helix 12
AB3
A
356 365Right-handed alpha
Helix 13
AB4
A
371 376Right-handed 310
Helix 14
AB5
A
385 389Right-handed 310
Helix 15
AB6
B
29 47Right-handed alpha
Helix 16
AB7
B
78 91Right-handed alpha
Helix 17
AB8
B
151 170Right-handed alpha
Helix 18
AB9
B
214 226Right-handed alpha
Helix 19
AC1
B
226 231Right-handed alpha
Helix 20
AC2
B
232 236Right-handed 310
Helix 21
AC3
B
265 270Right-handed alpha
Helix 22
AC4
B
289 308Right-handed alpha
Helix 23
AC5
B
341 353Right-handed alpha
Helix 24
AC6
B
356 365Right-handed alpha
Helix 25
AC7
B
371 376Right-handed 310
Helix 26
AC8
B
385 389Right-handed 310
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There are 6 sheets in PDB entry 6SW6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 25first strand
Strand 2
A
176 191anti-parallel
Strand 3
A
194 209anti-parallel
Strand 4
A
241 244parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 112first strand
Strand 2
A
64 72parallel
Strand 3
A
53 61anti-parallel
Strand 4
A
260 261anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 143first strand
Strand 2
A
313 320anti-parallel
Strand 3
A
329 333anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 25first strand
Strand 2
B
176 191anti-parallel
Strand 3
B
194 209anti-parallel
Strand 4
B
241 244parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 112first strand
Strand 2
B
64 72parallel
Strand 3
B
53 61anti-parallel
Strand 4
B
260 261anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 143first strand
Strand 2
B
313 320anti-parallel
Strand 3
B
329 333anti-parallel
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