Analysis of interatomic Contacts of Structural Units in PDB entry:
6SWD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SWD entry

There are 50 chains in PDB entry 6SWD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	A 13	C 16
2	G 18	C 52
2	G 54	C 249
2	G 251	C 285
2	G 287	C 302
2	G 304	C 318
2	G 320	A 372
2	A 374	C 378
2	G 380	C 393
2	G 395	C 478
2	G 480	C 510
2	G 512	C 545
2	G 547	C 589
2	G 591	C 625
2	G 627	C 635
2	G 637	C 647
2	G 649	C 702
2	G 704	C 717
2	G 719	C 730
2	G 732	C 750
2	G 752	C 827
2	G 829	C 838
2	G 840	C 847
2	G 849	C 850
2	G 852	C 867
2	G 869	G 1375
2	C 1377	C 1377
2	G 1379	G 1466
2	A 1468	A 1468
2	C 1470	C 1478
2	G 1480	G 1486
2	C 1489	U 1509
A	LYS 11	ALA 198
B	GLU 4	ILE 199
C	GLU 3	PRO 63
D	GLY 2	GLN 176
E	ALA 2	PRO 243
F	SER 2	PRO 230
G	ALA 2	TYR 125
I	THR 2	TYR 130
J	ALA 2	GLU 127
M	LYS 10	VAL 137
N	PRO 2	ARG 147
Q	ALA 2	ALA 153
R	VAL 2	GLU 110
V	MET 1	GLU 94
W	ALA 2	LEU 64
0	MET 1	LEU 36
5	U 805	A 824
6	VAL 13	GLY 107

There are 65 helices in PDB entry 6SWD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	17	Right-handed 310
Helix 2	AA2	A	40	44	Right-handed 310
Helix 3	AA3	A	54	56	Right-handed 310
Helix 4	AA4	A	89	94	Right-handed alpha
Helix 5	AA5	A	131	150	Right-handed alpha
Helix 6	AA6	A	154	163	Right-handed alpha
Helix 7	AA7	A	167	175	Right-handed alpha
Helix 8	AA8	A	176	178	Right-handed 310
Helix 9	AA9	B	8	16	Right-handed alpha
Helix 10	AB1	B	26	30	Right-handed 310
Helix 11	AB2	B	45	60	Right-handed alpha
Helix 12	AB3	B	77	87	Right-handed alpha
Helix 13	AB4	B	123	132	Right-handed alpha
Helix 14	AB5	B	163	178	Right-handed alpha
Helix 15	AB6	B	184	188	Right-handed 310
Helix 16	AB7	B	191	195	Right-handed 310
Helix 17	AB8	C	43	49	Right-handed alpha
Helix 18	AB9	D	19	34	Right-handed alpha
Helix 19	AC1	D	38	56	Right-handed alpha
Helix 20	AC2	D	56	61	Right-handed alpha
Helix 21	AC3	D	63	80	Right-handed alpha
Helix 22	AC4	D	88	92	Right-handed 310
Helix 23	AC5	D	96	100	Right-handed 310
Helix 24	AC6	D	104	111	Right-handed alpha
Helix 25	AC7	D	117	127	Right-handed alpha
Helix 26	AC8	E	45	50	Right-handed alpha
Helix 27	AC9	E	62	67	Right-handed alpha
Helix 28	AD1	F	3	13	Right-handed alpha
Helix 29	AD2	F	20	28	Right-handed alpha
Helix 30	AD3	F	33	37	Right-handed 310
Helix 31	AD4	F	46	48	Right-handed 310
Helix 32	AD5	F	49	54	Right-handed alpha
Helix 33	AD6	F	55	58	Right-handed 310
Helix 34	AD7	F	105	120	Right-handed alpha
Helix 35	AD8	F	170	178	Right-handed alpha
Helix 36	AD9	F	193	208	Right-handed alpha
Helix 37	AE1	F	214	222	Right-handed alpha
Helix 38	AE2	G	24	28	Right-handed 310
Helix 39	AE3	G	40	44	Right-handed alpha
Helix 40	AE4	I	5	18	Right-handed alpha
Helix 41	AE5	I	32	44	Right-handed alpha
Helix 42	AE6	I	86	94	Right-handed alpha
Helix 43	AE7	I	113	120	Right-handed alpha
Helix 44	AE8	J	24	26	Right-handed 310
Helix 45	AE9	J	88	93	Right-handed alpha
Helix 46	AF1	J	113	118	Right-handed alpha
Helix 47	AF2	M	56	75	Right-handed alpha
Helix 48	AF3	M	97	104	Right-handed alpha
Helix 49	AF4	N	12	24	Right-handed alpha
Helix 50	AF5	N	25	27	Right-handed 310
Helix 51	AF6	N	30	35	Right-handed alpha
Helix 52	AF7	N	92	97	Right-handed 310
Helix 53	AF8	N	110	114	Right-handed 310
Helix 54	AF9	N	134	139	Right-handed alpha
Helix 55	AG1	Q	29	42	Right-handed alpha
Helix 56	AG2	Q	46	57	Right-handed alpha
Helix 57	AG3	Q	77	83	Right-handed alpha
Helix 58	AG4	Q	92	101	Right-handed alpha
Helix 59	AG5	Q	118	139	Right-handed alpha
Helix 60	AG6	V	32	44	Right-handed alpha
Helix 61	AG7	V	74	82	Right-handed alpha
Helix 62	AG8	V	83	90	Right-handed alpha
Helix 63	AG9	0	16	33	Right-handed alpha
Helix 64	AH1	6	92	97	Right-handed alpha
Helix 65	AH2	6	101	105	Right-handed 310

There are 34 sheets in PDB entry 6SWD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	38	first strand
Strand 2	A	18	23	anti-parallel
Strand 3	A	78	80	parallel
Strand 4	A	73	74	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	52	first strand
Strand 2	A	65	70	anti-parallel
Strand 3	A	83	88	anti-parallel
Strand 4	A	185	191	anti-parallel
Strand 5	A	117	125	anti-parallel
Strand 6	A	103	111	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	41	43	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	93	first strand
Strand 2	B	68	71	parallel
Strand 3	B	116	117	parallel
Strand 4	B	138	141	parallel
Strand 5	B	152	155	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	39	42	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	132	first strand
Strand 2	D	152	154	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	43	first strand
Strand 2	E	85	86	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	77	first strand
Strand 2	E	72	73	anti-parallel
Strand 3	E	91	93	anti-parallel
Strand 4	E	98	99	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	104	first strand
Strand 2	E	110	113	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	150	first strand
Strand 2	E	137	142	anti-parallel
Strand 3	E	122	133	anti-parallel
Strand 4	E	163	167	anti-parallel
Strand 5	E	173	177	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	222	226	first strand
Strand 2	E	212	216	anti-parallel
Strand 3	E	196	203	anti-parallel
Strand 4	E	184	187	anti-parallel
Strand 5	E	230	232	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	75	first strand
Strand 2	F	78	89	anti-parallel
Strand 3	F	102	103	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	75	first strand
Strand 2	F	78	89	anti-parallel
Strand 3	F	95	99	anti-parallel
Strand 4	F	121	123	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	126	first strand
Strand 2	F	224	225	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	149	first strand
Strand 2	F	152	157	anti-parallel
Strand 3	F	184	188	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	22	first strand
Strand 2	G	3	9	anti-parallel
Strand 3	G	118	124	parallel
Strand 4	G	60	65	anti-parallel
Strand 5	G	38	39	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	88	first strand
Strand 2	G	103	108	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	24	27	first strand
Strand 2	I	60	65	anti-parallel
Strand 3	I	47	53	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	71	74	first strand
Strand 2	I	123	130	anti-parallel
Strand 3	I	80	81	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	71	74	first strand
Strand 2	I	123	130	anti-parallel
Strand 3	I	101	106	anti-parallel
Strand 4	I	109	112	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	4	first strand
Strand 2	J	28	29	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	36	37	first strand
Strand 2	J	59	60	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	43	47	first strand
Strand 2	J	53	57	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	65	66	first strand
Strand 2	J	122	123	parallel
Strand 3	J	108	110	anti-parallel
Strand 4	J	100	103	anti-parallel
Strand 5	J	77	81	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	38	43	first strand
Strand 2	M	26	31	anti-parallel
Strand 3	M	14	21	anti-parallel
Strand 4	M	78	84	parallel
Strand 5	M	111	117	parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	132	133	first strand
Strand 2	N	124	129	anti-parallel
Strand 3	N	102	107	anti-parallel
Strand 4	N	50	61	anti-parallel
Strand 5	N	69	77	anti-parallel
Strand 6	N	83	87	anti-parallel
Strand 7	N	124	129	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	67	68	first strand
Strand 2	Q	71	75	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	33	40	first strand
Strand 2	R	46	56	anti-parallel
Strand 3	R	63	73	anti-parallel
Strand 4	R	100	106	parallel
Strand 5	R	85	90	anti-parallel
Strand 6	R	33	40	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	2	3	first strand
Strand 2	V	16	24	anti-parallel
Strand 3	V	7	11	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	2	3	first strand
Strand 2	V	16	24	anti-parallel
Strand 3	V	65	72	anti-parallel
Strand 4	V	51	58	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	15	16	first strand
Strand 2	W	29	30	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	18	19	first strand
Strand 2	W	59	60	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	24	27	first strand
Strand 2	6	66	69	anti-parallel
Strand 3	6	82	85	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	37	40	first strand
Strand 2	6	46	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SWD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SWD