Analysis of interatomic Contacts of Structural Units in PDB entry:
6SWE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SWE entry

There are 25 chains in PDB entry 6SWE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	G 496	U 937
2	A 940	C 956
2	G 958	C 1027
2	G 1029	C 1146
2	G 1148	C 1183
2	G 1185	C 1192
2	G 1194	A 1201
2	G 1203	C 1232
2	G 1234	C 1238
2	G 1240	U 1365
H	LYS 3	ARG 215
K	ARG 2	ARG 135
L	MET 1	ILE 101
O	ASP 3	ARG 145
P	ALA 2	GLU 56
S	GLY 2	LEU 67
T	ARG 3	LYS 132
U	ALA 2	TYR 150
X	GLU 5	ARG 71
Y	MET 1	LYS 50
Z	ALA 2	LYS 198
3	MET 1	LYS 123
4	G 27	G 32
4	U 34	A 44
6	VAL 13	GLY 107

There are 60 helices in PDB entry 6SWE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	4	9	Right-handed alpha
Helix 2	AA2	H	16	20	Right-handed 310
Helix 3	AA3	H	56	60	Right-handed 310
Helix 4	AA4	H	62	70	Right-handed alpha
Helix 5	AA5	H	96	115	Right-handed alpha
Helix 6	AA6	H	118	130	Right-handed alpha
Helix 7	AA7	H	153	170	Right-handed alpha
Helix 8	AA8	H	179	192	Right-handed alpha
Helix 9	AA9	H	199	213	Right-handed alpha
Helix 10	AB1	K	38	43	Right-handed alpha
Helix 11	AB2	K	46	51	Right-handed alpha
Helix 12	AB3	K	56	58	Right-handed 310
Helix 13	AB4	K	74	90	Right-handed alpha
Helix 14	AB5	K	92	102	Right-handed alpha
Helix 15	AB6	K	104	109	Right-handed alpha
Helix 16	AB7	L	13	30	Right-handed alpha
Helix 17	AB8	L	78	83	Right-handed alpha
Helix 18	AB9	L	84	87	Right-handed 310
Helix 19	AC1	O	20	25	Right-handed alpha
Helix 20	AC2	O	32	44	Right-handed alpha
Helix 21	AC3	O	50	54	Right-handed 310
Helix 22	AC4	O	55	68	Right-handed alpha
Helix 23	AC5	O	69	73	Right-handed 310
Helix 24	AC6	O	94	112	Right-handed alpha
Helix 25	AC7	O	114	123	Right-handed alpha
Helix 26	AC8	P	15	19	Right-handed 310
Helix 27	AC9	P	40	44	Right-handed alpha
Helix 28	AD1	P	46	51	Right-handed alpha
Helix 29	AD2	S	6	16	Right-handed alpha
Helix 30	AD3	S	27	38	Right-handed alpha
Helix 31	AD4	S	44	59	Right-handed alpha
Helix 32	AD5	T	12	17	Right-handed alpha
Helix 33	AD6	T	29	38	Right-handed alpha
Helix 34	AD7	T	41	57	Right-handed alpha
Helix 35	AD8	T	103	107	Right-handed 310
Helix 36	AD9	U	8	20	Right-handed alpha
Helix 37	AE1	U	21	23	Right-handed 310
Helix 38	AE2	U	31	35	Right-handed 310
Helix 39	AE3	U	49	64	Right-handed alpha
Helix 40	AE4	U	69	77	Right-handed alpha
Helix 41	AE5	U	95	109	Right-handed alpha
Helix 42	AE6	U	122	139	Right-handed alpha
Helix 43	AE7	Z	3	8	Right-handed alpha
Helix 44	AE8	Z	11	25	Right-handed alpha
Helix 45	AE9	Z	50	56	Right-handed alpha
Helix 46	AF1	Z	59	72	Right-handed alpha
Helix 47	AF2	Z	87	90	Right-handed 310
Helix 48	AF3	Z	91	106	Right-handed alpha
Helix 49	AF4	Z	108	123	Right-handed alpha
Helix 50	AF5	Z	156	161	Right-handed alpha
Helix 51	AF6	3	13	21	Right-handed alpha
Helix 52	AF7	3	22	28	Right-handed alpha
Helix 53	AF8	3	35	46	Right-handed alpha
Helix 54	AF9	3	66	71	Right-handed alpha
Helix 55	AG1	3	83	90	Right-handed alpha
Helix 56	AG2	3	108	122	Right-handed alpha
Helix 57	AG3	6	54	59	Right-handed alpha
Helix 58	AG4	6	87	92	Right-handed alpha
Helix 59	AG5	6	92	97	Right-handed alpha
Helix 60	AG6	6	102	107	Right-handed alpha

There are 16 sheets in PDB entry 6SWE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	137	first strand
Strand 2	H	148	152	anti-parallel
Strand 3	X	40	46	parallel
Strand 4	X	24	31	anti-parallel
Strand 5	X	7	17	anti-parallel
Strand 6	X	54	57	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	9	first strand
Strand 2	K	13	21	anti-parallel
Strand 3	K	60	68	anti-parallel
Strand 4	K	26	28	parallel
Strand 5	K	31	32	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	34	40	first strand
Strand 2	L	69	75	anti-parallel
Strand 3	L	4	10	anti-parallel
Strand 4	L	94	99	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	50	first strand
Strand 2	L	61	66	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	7	9	first strand
Strand 2	O	14	16	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	81	82	first strand
Strand 2	O	90	91	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	30	31	first strand
Strand 2	P	38	39	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	64	65	first strand
Strand 2	T	80	84	parallel
Strand 3	T	89	93	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	79	81	first strand
Strand 2	U	89	91	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	111	114	first strand
Strand 2	U	118	121	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	33	38	first strand
Strand 2	Z	41	46	anti-parallel
Strand 3	Z	80	82	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	144	147	first strand
Strand 2	Z	127	134	anti-parallel
Strand 3	Z	176	183	anti-parallel
Strand 4	Z	163	168	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	31	33	first strand
Strand 2	3	100	102	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	53	54	first strand
Strand 2	3	79	80	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	24	26	first strand
Strand 2	6	67	69	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	28	33	first strand
Strand 2	6	36	39	anti-parallel
Strand 3	6	47	49	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SWE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SWE