Analysis of interatomic Contacts of Structural Units in PDB entry:
6SWF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SWF entry

There are 2 chains in PDB entry 6SWF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 2LYS 130
B
 MSE 2LYS 130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6SWF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 22Right-handed alpha
Helix 2
AA2
A
24 28Right-handed 310
Helix 3
AA3
A
38 49Right-handed alpha
Helix 4
AA4
A
64 76Right-handed alpha
Helix 5
AA5
A
86 100Right-handed 310
Helix 6
AA6
A
110 129Right-handed alpha
Helix 7
AA7
B
12 21Right-handed alpha
Helix 8
AA8
B
25 28Right-handed 310
Helix 9
AA9
B
38 49Right-handed alpha
Helix 10
AB1
B
64 76Right-handed alpha
Helix 11
AB2
B
92 100Right-handed 310
Helix 12
AB3
B
110 128Right-handed alpha
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There are 2 sheets in PDB entry 6SWF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 36first strand
Strand 2
A
4 9parallel
Strand 3
A
53 56parallel
Strand 4
A
80 85parallel
Strand 5
A
103 106parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 36first strand
Strand 2
B
4 9parallel
Strand 3
B
53 56parallel
Strand 4
B
80 86parallel
Strand 5
B
103 107parallel
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