Analysis of interatomic Contacts of Structural Units in PDB entry:
6SWH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SWH entry

There are 6 chains in PDB entry 6SWH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	GLU 205
B	GLY 11	GLN 160
C	ALA 25	TYR 158
D	GLY 1	GLU 205
E	THR 6	GLN 160
F	ASN 18	GLN 159

There are 10 helices in PDB entry 6SWH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	94	98	Right-handed 310
Helix 2	AA2	A	123	130	Right-handed 310
Helix 3	AA3	B	30	32	Right-handed 310
Helix 4	AA4	B	41	45	Right-handed 310
Helix 5	AA5	B	65	70	Right-handed alpha
Helix 6	AA6	C	40	43	Right-handed 310
Helix 7	AA7	D	127	131	Right-handed 310
Helix 8	AA8	E	65	70	Right-handed alpha
Helix 9	AA9	F	24	28	Right-handed alpha
Helix 10	AB1	F	40	43	Right-handed 310

There are 16 sheets in PDB entry 6SWH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	A	17	24	anti-parallel
Strand 3	A	61	69	anti-parallel
Strand 4	A	48	51	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	12	first strand
Strand 2	A	107	116	parallel
Strand 3	A	81	90	anti-parallel
Strand 4	A	30	39	anti-parallel
Strand 5	A	54	58	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	135	first strand
Strand 2	A	139	144	anti-parallel
Strand 3	A	171	176	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	165	167	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	28	first strand
Strand 2	B	55	62	anti-parallel
Strand 3	B	130	139	anti-parallel
Strand 4	B	100	106	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	77	first strand
Strand 2	B	154	158	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	56	first strand
Strand 2	C	131	139	anti-parallel
Strand 3	C	99	104	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	74	first strand
Strand 2	C	153	156	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	4	first strand
Strand 2	D	17	24	anti-parallel
Strand 3	D	61	69	anti-parallel
Strand 4	D	48	51	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	12	first strand
Strand 2	D	107	116	parallel
Strand 3	D	81	91	anti-parallel
Strand 4	D	30	39	anti-parallel
Strand 5	D	54	58	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	135	first strand
Strand 2	D	139	144	anti-parallel
Strand 3	D	171	176	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	165	167	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	28	first strand
Strand 2	E	55	62	anti-parallel
Strand 3	E	130	139	anti-parallel
Strand 4	E	100	106	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	77	first strand
Strand 2	E	154	158	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	74	first strand
Strand 2	F	153	158	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	104	first strand
Strand 2	F	127	139	anti-parallel
Strand 3	F	52	61	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SWH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SWH