Analysis of interatomic Contacts of Structural Units in PDB entry:
6SWR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SWR entry

There are 2 chains in PDB entry 6SWR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 5	THR 483
B	VAL 9	SER 186

There are 60 helices in PDB entry 6SWR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	34	Right-handed 310
Helix 2	AA2	A	89	93	Right-handed 310
Helix 3	AA3	A	133	149	Right-handed alpha
Helix 4	AA4	A	159	171	Right-handed alpha
Helix 5	AA5	A	183	191	Right-handed alpha
Helix 6	AA6	A	199	204	Right-handed alpha
Helix 7	AA7	A	207	214	Right-handed alpha
Helix 8	AA8	A	245	247	Right-handed 310
Helix 9	AA9	A	248	259	Right-handed alpha
Helix 10	AB1	A	270	279	Right-handed alpha
Helix 11	AB2	A	303	318	Right-handed alpha
Helix 12	AB3	A	326	336	Right-handed alpha
Helix 13	AB4	A	345	347	Right-handed 310
Helix 14	AB5	A	348	355	Right-handed alpha
Helix 15	AB6	A	389	400	Right-handed alpha
Helix 16	AB7	A	403	414	Right-handed alpha
Helix 17	AB8	A	421	423	Right-handed 310
Helix 18	AB9	A	424	430	Right-handed alpha
Helix 19	AC1	A	431	444	Right-handed alpha
Helix 20	AC2	A	452	470	Right-handed alpha
Helix 21	AC3	A	473	483	Right-handed alpha
Helix 22	AC4	B	23	43	Right-handed alpha
Helix 23	AC5	B	49	59	Right-handed alpha
Helix 24	AC6	B	59	85	Right-handed alpha
Helix 25	AC7	B	88	125	Right-handed alpha
Helix 26	AC8	B	131	135	Right-handed 310
Helix 27	AC9	B	138	170	Right-handed alpha
Helix 28	AD1	B	177	208	Right-handed alpha
Helix 29	AD2	B	213	222	Right-handed alpha
Helix 30	AD3	B	225	238	Right-handed alpha
Helix 31	AD4	D	30	34	Right-handed 310
Helix 32	AD5	D	89	93	Right-handed 310
Helix 33	AD6	D	133	149	Right-handed alpha
Helix 34	AD7	D	159	171	Right-handed alpha
Helix 35	AD8	D	183	191	Right-handed alpha
Helix 36	AD9	D	199	204	Right-handed alpha
Helix 37	AE1	D	207	214	Right-handed alpha
Helix 38	AE2	D	245	247	Right-handed 310
Helix 39	AE3	D	248	259	Right-handed alpha
Helix 40	AE4	D	270	279	Right-handed alpha
Helix 41	AE5	D	303	318	Right-handed alpha
Helix 42	AE6	D	326	336	Right-handed alpha
Helix 43	AE7	D	345	347	Right-handed 310
Helix 44	AE8	D	348	355	Right-handed alpha
Helix 45	AE9	D	389	400	Right-handed alpha
Helix 46	AF1	D	403	414	Right-handed alpha
Helix 47	AF2	D	421	423	Right-handed 310
Helix 48	AF3	D	424	430	Right-handed alpha
Helix 49	AF4	D	431	444	Right-handed alpha
Helix 50	AF5	D	452	470	Right-handed alpha
Helix 51	AF6	D	473	483	Right-handed alpha
Helix 52	AF7	E	23	43	Right-handed alpha
Helix 53	AF8	E	49	59	Right-handed alpha
Helix 54	AF9	E	59	85	Right-handed alpha
Helix 55	AG1	E	88	105	Right-handed alpha
Helix 56	AG2	E	105	125	Right-handed alpha
Helix 57	AG3	E	131	135	Right-handed 310
Helix 58	AG4	E	138	170	Right-handed alpha
Helix 59	AG5	E	177	208	Right-handed alpha
Helix 60	AG6	E	212	225	Right-handed alpha

There are 14 sheets in PDB entry 6SWR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	10	first strand
Strand 2	A	21	27	anti-parallel
Strand 3	A	80	85	anti-parallel
Strand 4	A	70	75	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	A	117	121	parallel
Strand 3	A	94	103	anti-parallel
Strand 4	A	36	42	anti-parallel
Strand 5	A	49	55	anti-parallel
Strand 6	A	60	62	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	A	117	121	parallel
Strand 3	A	94	103	anti-parallel
Strand 4	A	109	113	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	155	first strand
Strand 2	A	123	127	parallel
Strand 3	A	176	180	parallel
Strand 4	A	375	383	anti-parallel
Strand 5	A	223	228	anti-parallel
Strand 6	A	418	419	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	155	first strand
Strand 2	A	123	127	parallel
Strand 3	A	176	180	parallel
Strand 4	A	375	383	anti-parallel
Strand 5	A	445	446	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	264	first strand
Strand 2	A	339	344	parallel
Strand 3	A	231	235	anti-parallel
Strand 4	A	359	362	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	367	first strand
Strand 2	A	370	371	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	8	first strand
Strand 2	D	21	27	anti-parallel
Strand 3	D	80	85	anti-parallel
Strand 4	D	70	75	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	15	first strand
Strand 2	D	117	121	parallel
Strand 3	D	94	103	anti-parallel
Strand 4	D	36	42	anti-parallel
Strand 5	D	49	55	anti-parallel
Strand 6	D	60	62	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	15	first strand
Strand 2	D	117	121	parallel
Strand 3	D	94	103	anti-parallel
Strand 4	D	109	113	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	155	first strand
Strand 2	D	123	127	parallel
Strand 3	D	176	180	parallel
Strand 4	D	375	383	anti-parallel
Strand 5	D	223	228	anti-parallel
Strand 6	D	418	419	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	155	first strand
Strand 2	D	123	127	parallel
Strand 3	D	176	180	parallel
Strand 4	D	375	383	anti-parallel
Strand 5	D	445	446	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	264	first strand
Strand 2	D	339	344	parallel
Strand 3	D	231	235	anti-parallel
Strand 4	D	359	362	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	366	367	first strand
Strand 2	D	370	371	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SWR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SWR