Analysis of interatomic Contacts of Structural Units in PDB entry:
6SXB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SXB entry

There are 4 chains in PDB entry 6SXB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	ARG 9	ALA 906
G	SER 100	PRO 297
C	C 6	A 15
D	T 1	G 10

There are 44 helices in PDB entry 6SXB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	19	27	Right-handed alpha
Helix 2	AA2	F	40	52	Right-handed alpha
Helix 3	AA3	F	65	80	Right-handed alpha
Helix 4	AA4	F	96	101	Right-handed alpha
Helix 5	AA5	F	112	120	Right-handed alpha
Helix 6	AA6	F	136	139	Right-handed 310
Helix 7	AA7	F	144	153	Right-handed alpha
Helix 8	AA8	F	167	171	Right-handed 310
Helix 9	AA9	F	177	184	Right-handed alpha
Helix 10	AB1	F	197	204	Right-handed alpha
Helix 11	AB2	F	219	243	Right-handed alpha
Helix 12	AB3	F	254	259	Right-handed alpha
Helix 13	AB4	F	262	270	Right-handed alpha
Helix 14	AB5	F	278	301	Right-handed alpha
Helix 15	AB6	F	303	309	Right-handed alpha
Helix 16	AB7	F	310	321	Right-handed alpha
Helix 17	AB8	F	325	329	Right-handed 310
Helix 18	AB9	F	333	342	Right-handed alpha
Helix 19	AC1	F	378	398	Right-handed alpha
Helix 20	AC2	F	413	427	Right-handed alpha
Helix 21	AC3	F	428	439	Right-handed alpha
Helix 22	AC4	F	562	573	Right-handed alpha
Helix 23	AC5	F	583	597	Right-handed alpha
Helix 24	AC6	F	613	638	Right-handed alpha
Helix 25	AC7	F	688	691	Right-handed 310
Helix 26	AC8	F	694	700	Right-handed alpha
Helix 27	AC9	F	730	739	Right-handed alpha
Helix 28	AD1	F	739	749	Right-handed alpha
Helix 29	AD2	F	783	795	Right-handed alpha
Helix 30	AD3	F	805	816	Right-handed alpha
Helix 31	AD4	F	846	854	Right-handed alpha
Helix 32	AD5	F	859	868	Right-handed alpha
Helix 33	AD6	F	873	879	Right-handed alpha
Helix 34	AD7	F	880	889	Right-handed alpha
Helix 35	AD8	F	890	902	Right-handed alpha
Helix 36	AD9	G	143	149	Right-handed alpha
Helix 37	AE1	G	152	161	Right-handed alpha
Helix 38	AE2	G	180	192	Right-handed alpha
Helix 39	AE3	G	201	214	Right-handed alpha
Helix 40	AE4	G	231	239	Right-handed alpha
Helix 41	AE5	G	246	257	Right-handed alpha
Helix 42	AE6	G	259	266	Right-handed alpha
Helix 43	AE7	G	268	272	Right-handed 310
Helix 44	AE8	G	278	291	Right-handed alpha

There are 4 sheets in PDB entry 6SXB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	87	first strand
Strand 2	F	105	108	parallel
Strand 3	F	58	61	parallel
Strand 4	F	130	134	parallel
Strand 5	F	160	165	parallel
Strand 6	F	31	34	parallel
Strand 7	F	189	190	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	210	216	first strand
Strand 2	F	604	610	parallel
Strand 3	F	577	579	parallel
Strand 4	F	408	411	parallel
Strand 5	F	553	556	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	685	686	first strand
Strand 2	F	716	719	anti-parallel
Strand 3	F	722	727	anti-parallel
Strand 4	F	754	760	parallel
Strand 5	F	800	803	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	121	123	first strand
Strand 2	G	101	103	parallel
Strand 3	G	130	131	anti-parallel
Strand 4	G	136	142	anti-parallel
Strand 5	G	166	172	parallel
Strand 6	G	195	199	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SXB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SXB