Analysis of interatomic Contacts of Structural Units in PDB entry:
6SXJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SXJ entry

There is 1 chain in PDB entry 6SXJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 6LEU 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 6SXJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 24Right-handed alpha
Helix 2
AA2
A
34 39Right-handed alpha
Helix 3
AA3
A
58 70Right-handed alpha
Helix 4
AA4
A
71 73Right-handed 310
Helix 5
AA5
A
93 96Right-handed 310
Helix 6
AA6
A
109 111Right-handed 310
Helix 7
AA7
A
112 118Right-handed alpha
Helix 8
AA8
A
129 140Right-handed alpha
Helix 9
AA9
A
149 154Right-handed 310
Helix 10
AB1
A
158 174Right-handed alpha
Helix 11
AB2
A
180 197Right-handed alpha
Helix 12
AB3
A
202 213Right-handed alpha
Helix 13
AB4
A
215 230Right-handed alpha
Helix 14
AB5
A
235 239Right-handed 310
Helix 15
AB6
A
240 254Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6SXJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
85 91anti-parallel
Strand 3
A
47 53parallel
Strand 4
A
27 33anti-parallel
Strand 5
A
142 146anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
125 126anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il