Analysis of interatomic Contacts of Structural Units in PDB entry:
6SXV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SXV entry

There are 2 chains in PDB entry 6SXV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	LYS 501
B	THR 3	ARG 502

There are 32 helices in PDB entry 6SXV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	24	Right-handed 310
Helix 2	AA2	A	53	63	Right-handed alpha
Helix 3	AA3	A	73	79	Right-handed 310
Helix 4	AA4	A	80	85	Right-handed 310
Helix 5	AA5	A	87	91	Right-handed 310
Helix 6	AA6	A	108	120	Right-handed alpha
Helix 7	AA7	A	133	146	Right-handed alpha
Helix 8	AA8	A	150	159	Right-handed alpha
Helix 9	AA9	A	186	205	Right-handed alpha
Helix 10	AB1	A	224	235	Right-handed alpha
Helix 11	AB2	A	236	238	Right-handed 310
Helix 12	AB3	A	253	258	Right-handed alpha
Helix 13	AB4	A	260	283	Right-handed alpha
Helix 14	AB5	A	301	306	Right-handed alpha
Helix 15	AB6	A	323	340	Right-handed alpha
Helix 16	AB7	A	372	383	Right-handed alpha
Helix 17	AB8	B	20	24	Right-handed 310
Helix 18	AB9	B	53	63	Right-handed alpha
Helix 19	AC1	B	73	79	Right-handed 310
Helix 20	AC2	B	80	85	Right-handed 310
Helix 21	AC3	B	87	91	Right-handed 310
Helix 22	AC4	B	108	120	Right-handed alpha
Helix 23	AC5	B	133	146	Right-handed alpha
Helix 24	AC6	B	150	159	Right-handed alpha
Helix 25	AC7	B	186	205	Right-handed alpha
Helix 26	AC8	B	224	235	Right-handed alpha
Helix 27	AC9	B	236	238	Right-handed 310
Helix 28	AD1	B	253	258	Right-handed alpha
Helix 29	AD2	B	260	283	Right-handed alpha
Helix 30	AD3	B	301	307	Right-handed alpha
Helix 31	AD4	B	323	340	Right-handed alpha
Helix 32	AD5	B	372	383	Right-handed alpha

There are 12 sheets in PDB entry 6SXV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	393	first strand
Strand 2	A	4	9	anti-parallel
Strand 3	A	434	439	parallel
Strand 4	A	484	489	anti-parallel
Strand 5	A	479	481	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	386	388	anti-parallel
Strand 3	A	408	415	anti-parallel
Strand 4	A	420	427	anti-parallel
Strand 5	A	493	500	anti-parallel
Strand 6	A	447	455	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	67	70	parallel
Strand 3	A	122	127	parallel
Strand 4	A	169	172	parallel
Strand 5	A	209	212	parallel
Strand 6	A	240	247	parallel
Strand 7	A	289	297	parallel
Strand 8	A	344	350	parallel
Strand 9	A	25	27	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	96	first strand
Strand 2	A	101	103	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	361	first strand
Strand 2	A	367	369	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	397	first strand
Strand 2	A	405	406	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	393	first strand
Strand 2	B	4	9	anti-parallel
Strand 3	B	434	439	parallel
Strand 4	B	484	489	anti-parallel
Strand 5	B	479	481	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	386	388	anti-parallel
Strand 3	B	408	415	anti-parallel
Strand 4	B	420	427	anti-parallel
Strand 5	B	493	500	anti-parallel
Strand 6	B	447	455	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	67	70	parallel
Strand 3	B	122	127	parallel
Strand 4	B	169	172	parallel
Strand 5	B	209	212	parallel
Strand 6	B	240	247	parallel
Strand 7	B	289	297	parallel
Strand 8	B	344	350	parallel
Strand 9	B	25	27	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	101	103	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	B	367	369	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	397	first strand
Strand 2	B	405	406	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SXV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SXV