Analysis of interatomic Contacts of Structural Units in PDB entry:
6SY7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SY7 entry

There are 8 chains in PDB entry 6SY7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 20	LEU 487
B	LEU 21	LEU 487
C	SER 23	LEU 487
D	ASN 22	LEU 487
E	SER 23	LYS 486
F	SER 23	LEU 487
G	ASN 22	LEU 487
H	MET 20	LEU 487

There are154 helices in PDB entry 6SY7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	30	Right-handed 310
Helix 2	AA2	A	48	52	Right-handed 310
Helix 3	AA3	A	94	97	Right-handed 310
Helix 4	AA4	A	111	126	Right-handed alpha
Helix 5	AA5	A	137	143	Right-handed 310
Helix 6	AA6	A	145	150	Right-handed 310
Helix 7	AA7	A	154	158	Right-handed 310
Helix 8	AA8	A	160	164	Right-handed 310
Helix 9	AA9	A	177	189	Right-handed alpha
Helix 10	AB1	A	198	215	Right-handed alpha
Helix 11	AB2	A	240	261	Right-handed alpha
Helix 12	AB3	A	277	288	Right-handed alpha
Helix 13	AB4	A	301	313	Right-handed alpha
Helix 14	AB5	A	328	332	Right-handed 310
Helix 15	AB6	A	348	363	Right-handed alpha
Helix 16	AB7	A	378	383	Right-handed 310
Helix 17	AB8	A	388	408	Right-handed alpha
Helix 18	AB9	A	427	431	Right-handed alpha
Helix 19	AC1	A	441	451	Right-handed alpha
Helix 20	AC2	A	457	486	Right-handed alpha
Helix 21	AC3	B	25	30	Right-handed 310
Helix 22	AC4	B	48	52	Right-handed 310
Helix 23	AC5	B	94	97	Right-handed 310
Helix 24	AC6	B	111	126	Right-handed alpha
Helix 25	AC7	B	137	143	Right-handed 310
Helix 26	AC8	B	145	150	Right-handed 310
Helix 27	AC9	B	154	158	Right-handed 310
Helix 28	AD1	B	160	164	Right-handed 310
Helix 29	AD2	B	177	189	Right-handed alpha
Helix 30	AD3	B	198	215	Right-handed alpha
Helix 31	AD4	B	240	261	Right-handed alpha
Helix 32	AD5	B	277	288	Right-handed alpha
Helix 33	AD6	B	301	313	Right-handed alpha
Helix 34	AD7	B	348	363	Right-handed alpha
Helix 35	AD8	B	378	383	Right-handed 310
Helix 36	AD9	B	388	408	Right-handed alpha
Helix 37	AE1	B	427	431	Right-handed alpha
Helix 38	AE2	B	441	451	Right-handed alpha
Helix 39	AE3	B	457	486	Right-handed alpha
Helix 40	AE4	C	25	30	Right-handed 310
Helix 41	AE5	C	48	52	Right-handed 310
Helix 42	AE6	C	94	97	Right-handed 310
Helix 43	AE7	C	111	126	Right-handed alpha
Helix 44	AE8	C	137	143	Right-handed 310
Helix 45	AE9	C	145	150	Right-handed 310
Helix 46	AF1	C	154	158	Right-handed 310
Helix 47	AF2	C	160	164	Right-handed 310
Helix 48	AF3	C	177	189	Right-handed alpha
Helix 49	AF4	C	198	215	Right-handed alpha
Helix 50	AF5	C	240	261	Right-handed alpha
Helix 51	AF6	C	277	288	Right-handed alpha
Helix 52	AF7	C	301	313	Right-handed alpha
Helix 53	AF8	C	328	332	Right-handed 310
Helix 54	AF9	C	348	363	Right-handed alpha
Helix 55	AG1	C	378	383	Right-handed 310
Helix 56	AG2	C	388	408	Right-handed alpha
Helix 57	AG3	C	427	431	Right-handed alpha
Helix 58	AG4	C	441	451	Right-handed alpha
Helix 59	AG5	C	457	486	Right-handed alpha
Helix 60	AG6	D	25	30	Right-handed 310
Helix 61	AG7	D	48	52	Right-handed 310
Helix 62	AG8	D	94	97	Right-handed 310
Helix 63	AG9	D	111	126	Right-handed alpha
Helix 64	AH1	D	137	143	Right-handed 310
Helix 65	AH2	D	145	150	Right-handed 310
Helix 66	AH3	D	154	158	Right-handed 310
Helix 67	AH4	D	160	164	Right-handed 310
Helix 68	AH5	D	177	189	Right-handed alpha
Helix 69	AH6	D	198	215	Right-handed alpha
Helix 70	AH7	D	240	261	Right-handed alpha
Helix 71	AH8	D	277	288	Right-handed alpha
Helix 72	AH9	D	301	313	Right-handed alpha
Helix 73	AI1	D	348	363	Right-handed alpha
Helix 74	AI2	D	378	383	Right-handed 310
Helix 75	AI3	D	388	408	Right-handed alpha
Helix 76	AI4	D	427	431	Right-handed alpha
Helix 77	AI5	D	441	451	Right-handed alpha
Helix 78	AI6	D	457	486	Right-handed alpha
Helix 79	AI7	E	25	30	Right-handed 310
Helix 80	AI8	E	48	52	Right-handed 310
Helix 81	AI9	E	94	97	Right-handed 310
Helix 82	AJ1	E	111	126	Right-handed alpha
Helix 83	AJ2	E	137	143	Right-handed 310
Helix 84	AJ3	E	145	150	Right-handed 310
Helix 85	AJ4	E	154	158	Right-handed 310
Helix 86	AJ5	E	160	164	Right-handed 310
Helix 87	AJ6	E	177	189	Right-handed alpha
Helix 88	AJ7	E	198	215	Right-handed alpha
Helix 89	AJ8	E	240	261	Right-handed alpha
Helix 90	AJ9	E	277	288	Right-handed alpha
Helix 91	AK1	E	301	313	Right-handed alpha
Helix 92	AK2	E	348	363	Right-handed alpha
Helix 93	AK3	E	378	383	Right-handed 310
Helix 94	AK4	E	388	408	Right-handed alpha
Helix 95	AK5	E	427	431	Right-handed alpha
Helix 96	AK6	E	441	451	Right-handed alpha
Helix 97	AK7	E	457	484	Right-handed alpha
Helix 98	AK8	F	25	30	Right-handed 310
Helix 99	AK9	F	48	52	Right-handed 310
Helix 100	AL1	F	94	97	Right-handed 310
Helix 101	AL2	F	111	126	Right-handed alpha
Helix 102	AL3	F	137	143	Right-handed 310
Helix 103	AL4	F	145	150	Right-handed 310
Helix 104	AL5	F	154	158	Right-handed 310
Helix 105	AL6	F	160	164	Right-handed 310
Helix 106	AL7	F	177	189	Right-handed alpha
Helix 107	AL8	F	198	215	Right-handed alpha
Helix 108	AL9	F	240	261	Right-handed alpha
Helix 109	AM1	F	277	288	Right-handed alpha
Helix 110	AM2	F	301	313	Right-handed alpha
Helix 111	AM3	F	348	363	Right-handed alpha
Helix 112	AM4	F	378	383	Right-handed 310
Helix 113	AM5	F	388	408	Right-handed alpha
Helix 114	AM6	F	427	431	Right-handed alpha
Helix 115	AM7	F	441	451	Right-handed alpha
Helix 116	AM8	F	457	486	Right-handed alpha
Helix 117	AM9	G	25	30	Right-handed 310
Helix 118	AN1	G	48	52	Right-handed 310
Helix 119	AN2	G	94	97	Right-handed 310
Helix 120	AN3	G	111	126	Right-handed alpha
Helix 121	AN4	G	137	143	Right-handed 310
Helix 122	AN5	G	145	150	Right-handed 310
Helix 123	AN6	G	154	158	Right-handed 310
Helix 124	AN7	G	160	164	Right-handed 310
Helix 125	AN8	G	177	189	Right-handed alpha
Helix 126	AN9	G	198	215	Right-handed alpha
Helix 127	AO1	G	240	261	Right-handed alpha
Helix 128	AO2	G	277	288	Right-handed alpha
Helix 129	AO3	G	301	313	Right-handed alpha
Helix 130	AO4	G	348	363	Right-handed alpha
Helix 131	AO5	G	378	383	Right-handed 310
Helix 132	AO6	G	388	408	Right-handed alpha
Helix 133	AO7	G	427	431	Right-handed alpha
Helix 134	AO8	G	441	451	Right-handed alpha
Helix 135	AO9	G	457	486	Right-handed alpha
Helix 136	AP1	H	25	30	Right-handed 310
Helix 137	AP2	H	48	52	Right-handed 310
Helix 138	AP3	H	94	97	Right-handed 310
Helix 139	AP4	H	111	126	Right-handed alpha
Helix 140	AP5	H	137	143	Right-handed 310
Helix 141	AP6	H	145	150	Right-handed 310
Helix 142	AP7	H	154	158	Right-handed 310
Helix 143	AP8	H	160	164	Right-handed 310
Helix 144	AP9	H	177	189	Right-handed alpha
Helix 145	AQ1	H	198	215	Right-handed alpha
Helix 146	AQ2	H	240	261	Right-handed alpha
Helix 147	AQ3	H	277	288	Right-handed alpha
Helix 148	AQ4	H	301	313	Right-handed alpha
Helix 149	AQ5	H	348	363	Right-handed alpha
Helix 150	AQ6	H	378	383	Right-handed 310
Helix 151	AQ7	H	388	408	Right-handed alpha
Helix 152	AQ8	H	427	431	Right-handed alpha
Helix 153	AQ9	H	441	451	Right-handed alpha
Helix 154	AR1	H	457	486	Right-handed alpha

There are 24 sheets in PDB entry 6SY7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	90	91	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	81	84	anti-parallel
Strand 3	A	421	426	anti-parallel
Strand 4	A	413	418	anti-parallel
Strand 5	A	220	225	parallel
Strand 6	A	192	197	parallel
Strand 7	A	99	104	parallel
Strand 8	A	131	134	parallel
Strand 9	A	151	152	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	294	first strand
Strand 2	A	318	324	parallel
Strand 3	A	265	271	parallel
Strand 4	A	372	376	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	90	91	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	81	84	anti-parallel
Strand 3	B	421	426	anti-parallel
Strand 4	B	413	418	anti-parallel
Strand 5	B	220	225	parallel
Strand 6	B	192	197	parallel
Strand 7	B	99	104	parallel
Strand 8	B	131	134	parallel
Strand 9	B	151	152	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	294	first strand
Strand 2	B	318	324	parallel
Strand 3	B	265	271	parallel
Strand 4	B	372	376	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	90	91	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	81	84	anti-parallel
Strand 3	C	421	426	anti-parallel
Strand 4	C	413	418	anti-parallel
Strand 5	C	220	225	parallel
Strand 6	C	192	197	parallel
Strand 7	C	99	104	parallel
Strand 8	C	131	134	parallel
Strand 9	C	151	152	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	294	first strand
Strand 2	C	318	324	parallel
Strand 3	C	265	271	parallel
Strand 4	C	372	376	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	40	first strand
Strand 2	D	90	91	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	81	84	anti-parallel
Strand 3	D	421	426	anti-parallel
Strand 4	D	413	418	anti-parallel
Strand 5	D	220	225	parallel
Strand 6	D	192	197	parallel
Strand 7	D	99	104	parallel
Strand 8	D	131	134	parallel
Strand 9	D	151	152	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	292	294	first strand
Strand 2	D	318	324	parallel
Strand 3	D	265	271	parallel
Strand 4	D	372	376	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	40	first strand
Strand 2	E	90	91	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	81	84	anti-parallel
Strand 3	E	421	426	anti-parallel
Strand 4	E	413	418	anti-parallel
Strand 5	E	220	225	parallel
Strand 6	E	192	197	parallel
Strand 7	E	99	104	parallel
Strand 8	E	131	134	parallel
Strand 9	E	151	152	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	292	294	first strand
Strand 2	E	318	324	parallel
Strand 3	E	265	271	parallel
Strand 4	E	372	376	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	40	first strand
Strand 2	F	90	91	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	81	84	anti-parallel
Strand 3	F	421	426	anti-parallel
Strand 4	F	413	418	anti-parallel
Strand 5	F	220	225	parallel
Strand 6	F	192	197	parallel
Strand 7	F	99	104	parallel
Strand 8	F	131	134	parallel
Strand 9	F	151	152	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	292	294	first strand
Strand 2	F	318	324	parallel
Strand 3	F	265	271	parallel
Strand 4	F	372	376	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	40	first strand
Strand 2	G	90	91	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	60	first strand
Strand 2	G	81	84	anti-parallel
Strand 3	G	421	426	anti-parallel
Strand 4	G	413	418	anti-parallel
Strand 5	G	220	225	parallel
Strand 6	G	192	197	parallel
Strand 7	G	99	104	parallel
Strand 8	G	131	134	parallel
Strand 9	G	151	152	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	292	294	first strand
Strand 2	G	318	324	parallel
Strand 3	G	265	271	parallel
Strand 4	G	372	376	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	39	40	first strand
Strand 2	H	90	91	anti-parallel

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There are 9 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	81	84	anti-parallel
Strand 3	H	421	426	anti-parallel
Strand 4	H	413	418	anti-parallel
Strand 5	H	220	225	parallel
Strand 6	H	192	197	parallel
Strand 7	H	99	104	parallel
Strand 8	H	131	134	parallel
Strand 9	H	151	152	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	292	294	first strand
Strand 2	H	318	324	parallel
Strand 3	H	265	271	parallel
Strand 4	H	372	376	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SY7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SY7