Analysis of interatomic Contacts of Structural Units in PDB entry:
6SY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SY9 entry

There is 1 chain in PDB entry 6SY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2ASN 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6SY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 30Right-handed alpha
Helix 2
AA2
A
43 55Right-handed alpha
Helix 3
AA3
A
85 95Right-handed 310
Helix 4
AA4
A
97 100Right-handed 310
Helix 5
AA5
A
115 122Right-handed alpha
Helix 6
AA6
A
138 148Right-handed alpha
Helix 7
AA7
A
161 189Right-handed alpha
Helix 8
AA8
A
194 198Right-handed 310
Helix 9
AA9
A
199 213Right-handed alpha
Helix 10
AB1
A
244 258Right-handed alpha
Helix 11
AB2
A
260 269Right-handed alpha
Helix 12
AB3
A
319 323Right-handed 310
Helix 13
AB4
A
325 332Right-handed alpha
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There are 3 sheets in PDB entry 6SY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
215 220anti-parallel
Strand 3
A
227 231anti-parallel
Strand 4
A
236 243anti-parallel
Strand 5
A
304 311anti-parallel
Strand 6
A
297 300anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
14 18parallel
Strand 3
A
102 108parallel
Strand 4
A
129 134parallel
Strand 5
A
153 156parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 274first strand
Strand 2
A
293 295anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il