Analysis of interatomic Contacts of Structural Units in PDB entry:
6SYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SYH entry

There are 2 chains in PDB entry 6SYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3TYR 330
B
 LYS 3TYR 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6SYH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 41Right-handed alpha
Helix 2
AA2
A
42 47Right-handed 310
Helix 3
AA3
A
59 63Right-handed 310
Helix 4
AA4
A
64 80Right-handed alpha
Helix 5
AA5
A
95 107Right-handed alpha
Helix 6
AA6
A
128 142Right-handed alpha
Helix 7
AA7
A
143 146Right-handed 310
Helix 8
AA8
A
201 205Right-handed 310
Helix 9
AA9
A
229 238Right-handed alpha
Helix 10
AB1
A
254 268Right-handed alpha
Helix 11
AB2
A
289 294Right-handed alpha
Helix 12
AB3
A
302 315Right-handed alpha
Helix 13
AB4
A
319 330Right-handed alpha
Helix 14
AB5
B
31 41Right-handed alpha
Helix 15
AB6
B
43 48Right-handed alpha
Helix 16
AB7
B
59 63Right-handed 310
Helix 17
AB8
B
64 80Right-handed alpha
Helix 18
AB9
B
95 107Right-handed alpha
Helix 19
AC1
B
128 141Right-handed alpha
Helix 20
AC2
B
142 146Right-handed 310
Helix 21
AC3
B
201 205Right-handed 310
Helix 22
AC4
B
229 238Right-handed alpha
Helix 23
AC5
B
254 267Right-handed alpha
Helix 24
AC6
B
302 315Right-handed alpha
Helix 25
AC7
B
319 328Right-handed alpha
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There are 6 sheets in PDB entry 6SYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 54first strand
Strand 2
A
5 10parallel
Strand 3
A
86 90parallel
Strand 4
A
113 116parallel
Strand 5
A
151 154parallel
Strand 6
A
157 160anti-parallel
Strand 7
A
184 187anti-parallel
Strand 8
A
190 193anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
175 176anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 222first strand
Strand 2
A
242 247parallel
Strand 3
A
270 275parallel
Strand 4
A
296 297parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 54first strand
Strand 2
B
5 10parallel
Strand 3
B
84 90parallel
Strand 4
B
113 116parallel
Strand 5
B
151 154parallel
Strand 6
B
157 160anti-parallel
Strand 7
B
184 187anti-parallel
Strand 8
B
190 193anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
175 176anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 222first strand
Strand 2
B
242 247parallel
Strand 3
B
270 275parallel
Strand 4
B
296 297parallel
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