Analysis of interatomic Contacts of Structural Units in PDB entry:
6SYN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SYN entry

There is 1 chain in PDB entry 6SYN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 66ALA 566
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6SYN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
93 100Right-handed alpha
Helix 2
AA2
A
107 117Right-handed alpha
Helix 3
AA3
A
119 129Right-handed alpha
Helix 4
AA4
A
143 152Right-handed alpha
Helix 5
AA5
A
174 179Right-handed alpha
Helix 6
AA6
A
189 195Right-handed alpha
Helix 7
AA7
A
195 200Right-handed alpha
Helix 8
AA8
A
236 254Right-handed alpha
Helix 9
AA9
A
295 300Right-handed alpha
Helix 10
AB1
A
304 307Right-handed 310
Helix 11
AB2
A
308 319Right-handed alpha
Helix 12
AB3
A
351 358Right-handed alpha
Helix 13
AB4
A
359 369Right-handed alpha
Helix 14
AB5
A
372 382Right-handed alpha
Helix 15
AB6
A
407 415Right-handed alpha
Helix 16
AB7
A
423 436Right-handed alpha
Helix 17
AB8
A
459 471Right-handed alpha
Helix 18
AB9
A
472 474Right-handed 310
Helix 19
AC1
A
480 484Right-handed 310
Helix 20
AC2
A
540 545Right-handed alpha
Helix 21
AC3
A
545 560Right-handed alpha
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There are 6 sheets in PDB entry 6SYN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 142first strand
Strand 2
A
80 92anti-parallel
Strand 3
A
158 167anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 142first strand
Strand 2
A
80 92anti-parallel
Strand 3
A
73 74anti-parallel
Strand 4
A
231 232parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 277first strand
Strand 2
A
258 265anti-parallel
Strand 3
A
525 532anti-parallel
Strand 4
A
506 518anti-parallel
Strand 5
A
491 500anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 329first strand
Strand 2
A
348 350anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
338 340anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 440first strand
Strand 2
A
455 456anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il