Analysis of interatomic Contacts of Structural Units in PDB entry:
6SZ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SZ9 entry

There are 5 chains in PDB entry 6SZ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 104ASN 658
B
 ARG 122PRO 380
C
 ARG 7ASP 208
D
 SER 11GLU 293
E
 THR 5PRO 77
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 6SZ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 127Right-handed alpha
Helix 2
AA2
A
138 152Right-handed alpha
Helix 3
AA3
A
168 178Right-handed alpha
Helix 4
AA4
A
218 228Right-handed alpha
Helix 5
AA5
A
240 262Right-handed alpha
Helix 6
AA6
A
267 274Right-handed alpha
Helix 7
AA7
A
277 285Right-handed alpha
Helix 8
AA8
A
303 316Right-handed alpha
Helix 9
AA9
A
325 353Right-handed alpha
Helix 10
AB1
A
366 374Right-handed alpha
Helix 11
AB2
A
387 408Right-handed alpha
Helix 12
AB3
A
455 459Right-handed 310
Helix 13
AB4
A
468 476Right-handed alpha
Helix 14
AB5
A
479 487Right-handed alpha
Helix 15
AB6
A
594 615Right-handed alpha
Helix 16
AB7
A
627 638Right-handed alpha
Helix 17
AB8
A
642 658Right-handed alpha
Helix 18
AB9
B
126 134Right-handed alpha
Helix 19
AC1
B
138 142Right-handed 310
Helix 20
AC2
B
164 172Right-handed alpha
Helix 21
AC3
B
196 207Right-handed alpha
Helix 22
AC4
B
225 234Right-handed alpha
Helix 23
AC5
B
236 253Right-handed alpha
Helix 24
AC6
B
258 260Right-handed 310
Helix 25
AC7
B
261 266Right-handed alpha
Helix 26
AC8
B
271 280Right-handed alpha
Helix 27
AC9
B
283 296Right-handed alpha
Helix 28
AD1
B
297 299Right-handed 310
Helix 29
AD2
B
302 306Right-handed 310
Helix 30
AD3
B
308 313Right-handed alpha
Helix 31
AD4
B
314 323Right-handed alpha
Helix 32
AD5
B
333 346Right-handed alpha
Helix 33
AD6
B
354 366Right-handed alpha
Helix 34
AD7
B
371 376Right-handed alpha
Helix 35
AD8
C
18 28Right-handed alpha
Helix 36
AD9
C
28 43Right-handed alpha
Helix 37
AE1
C
79 84Right-handed alpha
Helix 38
AE2
C
107 123Right-handed alpha
Helix 39
AE3
C
128 151Right-handed alpha
Helix 40
AE4
C
156 166Right-handed alpha
Helix 41
AE5
C
171 179Right-handed alpha
Helix 42
AE6
C
191 207Right-handed alpha
Helix 43
AE7
D
15 29Right-handed alpha
Helix 44
AE8
D
36 42Right-handed alpha
Helix 45
AE9
D
48 85Right-handed alpha
Helix 46
AF1
D
97 159Right-handed alpha
Helix 47
AF2
D
167 181Right-handed alpha
Helix 48
AF3
D
188 203Right-handed alpha
Helix 49
AF4
D
210 266Right-handed alpha
Helix 50
AF5
D
276 283Right-handed alpha
Helix 51
AF6
E
8 19Right-handed alpha
Helix 52
AF7
E
22 39Right-handed alpha
Helix 53
AF8
E
43 64Right-handed alpha
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There are 6 sheets in PDB entry 6SZ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 120first strand
Strand 2
A
106 111anti-parallel
Strand 3
A
566 571anti-parallel
Strand 4
A
558 561anti-parallel
Strand 5
A
490 492anti-parallel
Strand 6
A
129 132parallel
Strand 7
A
463 466parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 189first strand
Strand 2
A
376 380parallel
Strand 3
A
158 161parallel
Strand 4
A
435 437parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
297 298anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 176first strand
Strand 2
B
194 195anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 60first strand
Strand 2
C
75 78anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
99 101first strand
Strand 2
C
183 185anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il