Analysis of interatomic Contacts of Structural Units in PDB entry:
6SZQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SZQ entry

There are 6 chains in PDB entry 6SZQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 8	VAL 283
B	PRO 7	LYS 282
C	ALA 2	LYS 282
D	HIS -2	VAL 283
E	MET 1	VAL 283
F	HIS 6	VAL 283

There are 76 helices in PDB entry 6SZQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	29	Right-handed alpha
Helix 2	AA2	A	39	56	Right-handed alpha
Helix 3	AA3	A	76	79	Right-handed 310
Helix 4	AA4	A	95	100	Right-handed 310
Helix 5	AA5	A	101	112	Right-handed alpha
Helix 6	AA6	A	127	129	Right-handed 310
Helix 7	AA7	A	147	158	Right-handed alpha
Helix 8	AA8	A	173	176	Right-handed 310
Helix 9	AA9	A	191	205	Right-handed alpha
Helix 10	AB1	A	217	221	Right-handed 310
Helix 11	AB2	A	242	250	Right-handed alpha
Helix 12	AB3	A	264	269	Right-handed 310
Helix 13	AB4	A	272	276	Right-handed 310
Helix 14	AB5	B	24	29	Right-handed alpha
Helix 15	AB6	B	39	56	Right-handed alpha
Helix 16	AB7	B	76	79	Right-handed 310
Helix 17	AB8	B	95	100	Right-handed 310
Helix 18	AB9	B	101	112	Right-handed alpha
Helix 19	AC1	B	127	129	Right-handed 310
Helix 20	AC2	B	147	158	Right-handed alpha
Helix 21	AC3	B	173	176	Right-handed 310
Helix 22	AC4	B	191	205	Right-handed alpha
Helix 23	AC5	B	217	221	Right-handed 310
Helix 24	AC6	B	242	250	Right-handed alpha
Helix 25	AC7	B	272	276	Right-handed 310
Helix 26	AC8	C	24	29	Right-handed alpha
Helix 27	AC9	C	39	56	Right-handed alpha
Helix 28	AD1	C	76	79	Right-handed 310
Helix 29	AD2	C	95	100	Right-handed 310
Helix 30	AD3	C	101	112	Right-handed alpha
Helix 31	AD4	C	127	129	Right-handed 310
Helix 32	AD5	C	147	158	Right-handed alpha
Helix 33	AD6	C	173	176	Right-handed 310
Helix 34	AD7	C	191	205	Right-handed alpha
Helix 35	AD8	C	217	221	Right-handed 310
Helix 36	AD9	C	242	250	Right-handed alpha
Helix 37	AE1	C	264	269	Right-handed 310
Helix 38	AE2	C	272	276	Right-handed 310
Helix 39	AE3	D	24	29	Right-handed alpha
Helix 40	AE4	D	39	55	Right-handed alpha
Helix 41	AE5	D	77	79	Right-handed 310
Helix 42	AE6	D	95	99	Right-handed 310
Helix 43	AE7	D	101	112	Right-handed alpha
Helix 44	AE8	D	127	129	Right-handed 310
Helix 45	AE9	D	147	156	Right-handed alpha
Helix 46	AF1	D	173	176	Right-handed 310
Helix 47	AF2	D	191	205	Right-handed alpha
Helix 48	AF3	D	217	221	Right-handed 310
Helix 49	AF4	D	242	248	Right-handed alpha
Helix 50	AF5	D	264	269	Right-handed 310
Helix 51	AF6	D	272	276	Right-handed 310
Helix 52	AF7	E	24	29	Right-handed alpha
Helix 53	AF8	E	39	56	Right-handed alpha
Helix 54	AF9	E	76	79	Right-handed 310
Helix 55	AG1	E	95	99	Right-handed 310
Helix 56	AG2	E	100	112	Right-handed alpha
Helix 57	AG3	E	127	129	Right-handed 310
Helix 58	AG4	E	147	158	Right-handed alpha
Helix 59	AG5	E	173	176	Right-handed 310
Helix 60	AG6	E	191	205	Right-handed alpha
Helix 61	AG7	E	217	221	Right-handed 310
Helix 62	AG8	E	245	251	Right-handed alpha
Helix 63	AG9	E	264	269	Right-handed 310
Helix 64	AH1	E	272	276	Right-handed 310
Helix 65	AH2	F	24	29	Right-handed alpha
Helix 66	AH3	F	39	55	Right-handed alpha
Helix 67	AH4	F	76	79	Right-handed 310
Helix 68	AH5	F	95	99	Right-handed 310
Helix 69	AH6	F	101	112	Right-handed alpha
Helix 70	AH7	F	127	129	Right-handed 310
Helix 71	AH8	F	147	158	Right-handed alpha
Helix 72	AH9	F	173	176	Right-handed 310
Helix 73	AI1	F	193	205	Right-handed alpha
Helix 74	AI2	F	217	221	Right-handed 310
Helix 75	AI3	F	264	269	Right-handed 310
Helix 76	AI4	F	272	276	Right-handed 310

There are 30 sheets in PDB entry 6SZQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	65	first strand
Strand 2	A	15	19	parallel
Strand 3	A	277	279	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	84	first strand
Strand 2	A	87	90	anti-parallel
Strand 3	A	115	118	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	137	142	anti-parallel
Strand 3	A	162	167	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	182	first strand
Strand 2	A	185	189	anti-parallel
Strand 3	A	210	214	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	227	first strand
Strand 2	A	231	236	anti-parallel
Strand 3	A	255	259	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	65	first strand
Strand 2	B	15	19	parallel
Strand 3	B	277	279	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	84	first strand
Strand 2	B	87	90	anti-parallel
Strand 3	B	115	118	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	133	first strand
Strand 2	B	137	142	anti-parallel
Strand 3	B	162	167	parallel
Strand 4	E	2	3	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	182	first strand
Strand 2	B	185	189	anti-parallel
Strand 3	B	210	214	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	227	first strand
Strand 2	B	231	236	anti-parallel
Strand 3	B	256	259	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	65	first strand
Strand 2	C	15	19	parallel
Strand 3	C	277	279	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	84	first strand
Strand 2	C	87	90	anti-parallel
Strand 3	C	115	118	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	133	first strand
Strand 2	C	137	142	anti-parallel
Strand 3	C	162	167	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	182	first strand
Strand 2	C	185	189	anti-parallel
Strand 3	C	210	214	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	227	first strand
Strand 2	C	231	236	anti-parallel
Strand 3	C	256	259	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	65	first strand
Strand 2	D	15	19	parallel
Strand 3	D	277	279	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	84	first strand
Strand 2	D	87	90	anti-parallel
Strand 3	D	115	118	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	133	first strand
Strand 2	D	137	142	anti-parallel
Strand 3	D	162	167	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	182	first strand
Strand 2	D	185	189	anti-parallel
Strand 3	D	210	214	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	227	first strand
Strand 2	D	231	236	anti-parallel
Strand 3	D	256	259	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	65	first strand
Strand 2	E	15	19	parallel
Strand 3	E	277	279	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	84	first strand
Strand 2	E	87	90	anti-parallel
Strand 3	E	115	118	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	133	first strand
Strand 2	E	137	142	anti-parallel
Strand 3	E	162	167	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	182	first strand
Strand 2	E	185	189	anti-parallel
Strand 3	E	210	214	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	223	227	first strand
Strand 2	E	231	236	anti-parallel
Strand 3	E	255	259	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	65	first strand
Strand 2	F	15	19	parallel
Strand 3	F	277	279	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	84	first strand
Strand 2	F	87	90	anti-parallel
Strand 3	F	115	118	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	133	first strand
Strand 2	F	138	142	anti-parallel
Strand 3	F	163	167	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	182	first strand
Strand 2	F	185	189	anti-parallel
Strand 3	F	210	214	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	223	227	first strand
Strand 2	F	231	236	anti-parallel
Strand 3	F	255	259	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SZQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SZQ