Analysis of interatomic Contacts of Structural Units in PDB entry:
6T0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6T0C entry

There are 2 chains in PDB entry 6T0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 344MET 507
B
 GLY 344MET 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6T0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
345 353Right-handed alpha
Helix 2
AA2
A
364 375Right-handed alpha
Helix 3
AA3
A
380 394Right-handed alpha
Helix 4
AA4
A
456 459Right-handed 310
Helix 5
AA5
A
463 467Right-handed 310
Helix 6
AA6
A
481 492Right-handed alpha
Helix 7
AA7
A
499 505Right-handed alpha
Helix 8
AA8
B
345 352Right-handed alpha
Helix 9
AA9
B
364 375Right-handed alpha
Helix 10
AB1
B
380 394Right-handed alpha
Helix 11
AB2
B
456 458Right-handed 310
Helix 12
AB3
B
481 491Right-handed alpha
Helix 13
AB4
B
500 507Right-handed alpha
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There are 4 sheets in PDB entry 6T0C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 378first strand
Strand 2
A
442 449anti-parallel
Strand 3
A
408 415anti-parallel
Strand 4
A
453 454anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 378first strand
Strand 2
A
442 449anti-parallel
Strand 3
A
408 415anti-parallel
Strand 4
A
397 403anti-parallel
Strand 5
A
356 362parallel
Strand 6
A
479 480anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 377first strand
Strand 2
B
442 449anti-parallel
Strand 3
B
411 420anti-parallel
Strand 4
B
396 403anti-parallel
Strand 5
B
355 362parallel
Strand 6
B
479 480anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 409first strand
Strand 2
B
453 454anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il