Analysis of interatomic Contacts of Structural Units in PDB entry:
6T0W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6T0W entry

There are 4 chains in PDB entry 6T0W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 196	VAL 716
B	MET 1	LYS 668
C	ASN 44	ASN 129
V	A 1	U 34

There are 54 helices in PDB entry 6T0W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	206	214	Right-handed alpha
Helix 2	AA2	A	222	233	Right-handed alpha
Helix 3	AA3	A	237	245	Right-handed alpha
Helix 4	AA4	A	266	270	Right-handed 310
Helix 5	AA5	A	301	313	Right-handed alpha
Helix 6	AA6	A	313	318	Right-handed alpha
Helix 7	AA7	A	332	347	Right-handed alpha
Helix 8	AA8	A	359	366	Right-handed alpha
Helix 9	AA9	A	376	383	Right-handed alpha
Helix 10	AB1	A	401	410	Right-handed alpha
Helix 11	AB2	A	429	447	Right-handed alpha
Helix 12	AB3	A	449	472	Right-handed alpha
Helix 13	AB4	A	529	533	Right-handed 310
Helix 14	AB5	A	563	569	Right-handed alpha
Helix 15	AB6	A	574	592	Right-handed alpha
Helix 16	AB7	A	599	605	Right-handed alpha
Helix 17	AB8	A	628	646	Right-handed alpha
Helix 18	AB9	A	648	670	Right-handed alpha
Helix 19	AC1	A	678	687	Right-handed alpha
Helix 20	AC2	A	693	715	Right-handed alpha
Helix 21	AC3	B	7	12	Right-handed alpha
Helix 22	AC4	B	17	22	Right-handed 310
Helix 23	AC5	B	35	49	Right-handed alpha
Helix 24	AC6	B	84	99	Right-handed alpha
Helix 25	AC7	B	101	115	Right-handed alpha
Helix 26	AC8	B	118	123	Right-handed 310
Helix 27	AC9	B	138	151	Right-handed alpha
Helix 28	AD1	B	152	154	Right-handed 310
Helix 29	AD2	B	163	174	Right-handed alpha
Helix 30	AD3	B	213	222	Right-handed alpha
Helix 31	AD4	B	248	265	Right-handed alpha
Helix 32	AD5	B	276	291	Right-handed alpha
Helix 33	AD6	B	308	313	Right-handed alpha
Helix 34	AD7	B	314	326	Right-handed alpha
Helix 35	AD8	B	330	337	Right-handed alpha
Helix 36	AD9	B	339	345	Right-handed alpha
Helix 37	AE1	B	370	375	Right-handed 310
Helix 38	AE2	B	377	381	Right-handed 310
Helix 39	AE3	B	382	393	Right-handed alpha
Helix 40	AE4	B	394	396	Right-handed 310
Helix 41	AE5	B	415	426	Right-handed alpha
Helix 42	AE6	B	454	471	Right-handed alpha
Helix 43	AE7	B	517	536	Right-handed alpha
Helix 44	AE8	B	539	558	Right-handed alpha
Helix 45	AE9	B	571	582	Right-handed alpha
Helix 46	AF1	B	584	588	Right-handed 310
Helix 47	AF2	B	589	593	Right-handed 310
Helix 48	AF3	B	606	612	Right-handed alpha
Helix 49	AF4	B	613	615	Right-handed 310
Helix 50	AF5	B	616	624	Right-handed alpha
Helix 51	AF6	C	45	55	Right-handed alpha
Helix 52	AF7	C	65	70	Right-handed alpha
Helix 53	AF8	C	94	105	Right-handed alpha
Helix 54	AF9	C	117	128	Right-handed alpha

There are 11 sheets in PDB entry 6T0W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	675	676	anti-parallel
Strand 3	B	482	485	anti-parallel
Strand 4	B	298	304	anti-parallel
Strand 5	B	445	452	anti-parallel
Strand 6	B	435	442	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	294	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	514	522	anti-parallel
Strand 4	A	550	562	anti-parallel
Strand 5	A	537	545	anti-parallel
Strand 6	A	324	326	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	294	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	476	486	anti-parallel
Strand 4	A	355	356	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	B	364	368	parallel
Strand 3	B	355	359	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	625	627	first strand
Strand 2	A	615	619	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	184	first strand
Strand 2	B	207	212	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	244	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	401	403	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	494	497	anti-parallel
Strand 3	B	500	503	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	642	first strand
Strand 2	B	654	655	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6T0W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6T0W